FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.096e-13
Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  274 GSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKL---EGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVIT-PMDMVKQRLQLKSSPYKG-----VADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPN 807
            GSIAG +    +YP+D +KTRMQ   A R L  A  + +   +LK+   EG  G Y G+    +G  P  A+  +V +  +          S+   +    S  A   + T P+++VK RLQ++S  Y G       +   +++ + G+   Y      ++ + PF A++F TY  +K+ L +FDPN
Sbjct:  537 GSIAGCIGATVVYPIDFIKTRMQ---AQRSL--AQYKNSIDCLLKIISREGIKGLYSGLGPQLIGVAPEKAIKLTVNDFMRNRLTDKNGKLSLFPEIISGASAGACQVIFTNPLEIVKIRLQVQSD-YVGENIQQANETATQIVKKLGLRGLYNGVAACLMRDVPFSAIYFPTYAHLKKDLFDFDPN 717          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_PHANO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Phaeosphaeria nodorum GN=TPC1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.738e-13
Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF---PGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-----------SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 801
            ISG+ AG+      YP+D L+TR    G  R      +  +  S+ + EGP GF+RG+ A      P   ++F+ YE  K      P  +P  S + AV+GV ++V S   + P+D  ++RLQ++              Y GV   ++ +   EG    Y     +++  AP  AV   TYE     ++ F+
Sbjct:  128 ISGAGAGAAATTVTYPLDLLRTRFAAQGKDRVY--TSIVASLKSIAQHEGPTGFFRGLGAGVSQIVPYMGLFFASYESLKPVMADSPLPLPLGS-SDAVAGVVASVVSKTAVYPLDTTRKRLQVQGPNRARYVHRNIPTYSGVLMTLQHIWKHEGRRGMYRGLTVSLLKAAPASAVTMWTYERAMGIMVAFE 316          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SAMC_XENTR (S-adenosylmethionine mitochondrial carrier protein OS=Xenopus tropicalis GN=slc25a26 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.738e-13
Identity = 52/178 (29.21%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  250 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNS-MAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            EF   +++G  AG    + ++P+DT+KTR+Q         P G    FS   K  G  G Y G+ +  +G+ P  A +F  YE  K+         S + H  +     V +  +  P +++KQR Q+  SP       +   L +EGI   Y  Y++TV+   PF  V F  +E++K
Sbjct:    5 EFCASLLAGGTAGMCVDLILFPLDTIKTRLQ--------SPLG----FS---KSGGFRGIYAGVPSTAVGSFPNAAAFFVTYESAKQLLRSDSSYLSPIIHMAAASLGEVVACLIRVPSEVIKQRAQV--SPSSTTYQMLSATLRQEGIKGLYRGYKSTVLREIPFSLVQFPLWESLK 165          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SAMC_BOVIN (S-adenosylmethionine mitochondrial carrier protein OS=Bos taurus GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.738e-13
Identity = 50/178 (28.09%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSM--AHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            F   +++G +AG    + ++P+DT+KTR+Q         P G  +A        G  G Y G+ +  +G+ P  A +F  YE  K        +  M   H ++     V +  +  P ++VKQR Q+ +S   G       +L +EGI   Y  Y++TV+   PF  V F  +E++K
Sbjct:    6 FTASLVAGGVAGVSVDLILFPLDTIKTRLQ--------SPQGFYKA-------GGFYGVYAGVPSTAIGSFPNAAAFFVTYEYVKWILHTDSSSYLMPVTHMLAASVGEVVACLIRVPSEVVKQRAQVSAS--SGTFHIFSNILCQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLK 166          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ODC_SCHPO (Probable mitochondrial 2-oxodicarboxylate carrier OS=Schizosaccharomyces pombe GN=SPAC328.09 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.738e-13
Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  238 HDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQV-IGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVS---GVFSTVASDAVITPMDMVKQRLQ--LKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            HD + F     +G++AG  E + +YP+D +KTRMQ+ +G S      G       ++K EGP   YRGI    L   P  A+ F+  +   + +         + A+S   G  +      V+ P +++K RLQ    +S Y G  DC  +++ +E I A Y  +  T+  +  + A +F   + ++ +L
Sbjct:    3 HDNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKS---DYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASKYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSL 189          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCFC_DICDI (Mitochondrial substrate carrier family protein C OS=Dictyostelium discoideum GN=mcfC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.738e-13
Identity = 50/185 (27.03%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  262 FMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF-PGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK-SSPYKGVADCVKRVLV-EEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPN 807
            +M++GS+AG     +  P++ +K   Q+        P  +  AF +  K  G  GF+RG  A  +   P  AV F  YE  K+ F        S    +SG  + V S   + P+++V+ RL  + +  Y G+ DC K++ + E+ I  FY     ++    P   V+   YE +K  +++   N
Sbjct:  189 YMLAGSVAGFASRTSTAPLERVKIMCQLNHGK----PISLISAFKACYKDGGIKGFFRGNLANIIKVSPESAVKFGTYEYVKKLFAENDCELTSAQRFISGSVAGVVSHTTLFPLEVVRLRLSAEIAGTYNGIFDCFKKIAISEKSIRPFYRGLGASITATIPHSGVNMMVYEFLKHKVIKMTGN 369          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ODC_MOUSE (Mitochondrial 2-oxodicarboxylate carrier OS=Mus musculus GN=Slc25a21 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.576e-13
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 1
Query:  271 SGSIAGSVEHMAMYPVDTLKTRMQVI-GASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYK---GVADCVKRVLVEEGIG--AFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            +G  AG VE   M+P+D +KTR QV    + P     VR +F  + + EG  GFY+GI    L   P  AV FS +EL K+F      +  +   ++G+ S +    V+ P ++VK  LQ+  + +K         ++++ +EG+G          T+  +  F  V+F  Y  VK  +
Sbjct:   18 AGGSAGLVEICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEGLFGFYKGIIPPILAETPKRAVKFSTFELYKKFLGYMSLSPGLTFLIAGLGSGLTEAVVVNPFEVVKVGLQVNRNLFKEQPSTFAYARQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFGFYHNVKNII 196          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SAMC_MOUSE (S-adenosylmethionine mitochondrial carrier protein OS=Mus musculus GN=Slc25a26 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 50/182 (27.47%), Postives = 84/182 (46.15%), Query Frame = 1
Query:  241 DGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNN--SMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            D   F   +++G +AG    + ++P+DT+KTR+Q         P G  +A        G  G Y G+ +  +G+ P  A +F  YE  K        ++   + H ++     V +  +  P ++VKQR Q+ +S           +L EEGI   Y  Y++TV+   PF  V F  +E++K
Sbjct:    2 DAPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQ--------SPQGFNKA-------GGFRGIYAGVPSAAVGSFPNAAAFFLTYEYVKSLLHTDSTSHFKPVKHMLAASTGEVVACLIRVPSEVVKQRAQVSAS--SKTLQIFLTILSEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLK 166          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MFN2A_XENLA (Mitoferrin-2A OS=Xenopus laevis GN=slc25a28-A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 40/122 (32.79%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  196 EISVNPSKTKETTIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSG 561
            E++   ++ +   + DG      M++G++AG +EH  MYPVD +KTRMQ +          V  A S +++ EG     RG+     GAGPAHA+YF+ YE  K+     +     +H  +G
Sbjct:   58 ELASKDNEPEYEALPDGSNVTTHMLAGAVAGVMEHCLMYPVDCVKTRMQSLQPDPAARYRNVMDALSKIVRTEGFWRPLRGLNVTATGAGPAHALYFACYEKLKKTLSDIIHPGGNSHIANG 179          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.671e-13
Identity = 51/178 (28.65%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  271 SGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVP-NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS----PYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            +G +AG +     +P DT+K R+QV    +P +  G    F S++K E   G Y+G+ +  +G    +A+ F V            P N  +A A +G    V    +  PM++ K RLQL+++     YKG  DC+ ++   EG+        +T++   P   V+F TY+ + RA+
Sbjct:   10 AGGVAGVI---VGHPFDTVKVRLQVQNTEKPQY-RGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSPLNQFLAGAAAGAIQCV----ICCPMELAKTRLQLQAAGPARAYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVLTRAM 179          

HSP 2 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 53/180 (29.44%), Postives = 87/180 (48.33%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF---PGG---VPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQ---LKSSP-YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAV 777
            ++G+ AG+++ +   P++  KTR+Q+  A       G       + + EG  G  RG+ +  L   P+  VYF  Y++        PG    VP   +A   SG+ S +++     PMD+VK RLQ   L+ +P Y+G+ DC+++    EG   F     +T++   P  A  FAT   V
Sbjct:   97 LAGAAAGAIQCVICCPMELAKTRLQLQAAGPARAYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVLTRAMGCEPGDRLLVPKLLLAGGTSGITSWLST----YPMDVVKSRLQADGLQGTPRYRGIVDCMRQSYQAEGWQVFTRGLASTLLRAFPVNAATFATVTVV 272          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
AGC1_YEAST2.096e-1329.41Mitochondrial aspartate-glutamate transporter AGC1... [more]
TPC1_PHANO2.738e-1328.65Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
SAMC_XENTR2.738e-1329.21S-adenosylmethionine mitochondrial carrier protein... [more]
SAMC_BOVIN2.738e-1328.09S-adenosylmethionine mitochondrial carrier protein... [more]
ODC_SCHPO2.738e-1327.37Probable mitochondrial 2-oxodicarboxylate carrier ... [more]
MCFC_DICDI2.738e-1327.03Mitochondrial substrate carrier family protein C O... [more]
ODC_MOUSE3.576e-1329.61Mitochondrial 2-oxodicarboxylate carrier OS=Mus mu... [more]
SAMC_MOUSE4.671e-1327.47S-adenosylmethionine mitochondrial carrier protein... [more]
MFN2A_XENLA4.671e-1332.79Mitoferrin-2A OS=Xenopus laevis GN=slc25a28-A PE=2... [more]
MCATL_RAT4.671e-1328.65Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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