FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878130_ssr83 microsatellite FC878130_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:17..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SYMTH (Ornithine carbamoyltransferase OS=Symbiobacterium thermophilum GN=argF PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.780e-43
Identity = 87/183 (47.54%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DF+ + D+ +  + ++L+ A   KA LK+G R   P KGK + M FAKPS RTR+SFE G   LGG A++L   D+Q+ + E   D ARV+ R+ D IM R F H+++++LA++AT+PVINGLTD  HPCQ++AD LT +E  G L G K+ YVGDGNNV HS +   +    H V A P+G+
Sbjct:    8 DFISLHDWSRDELEEVLELAMWQKARLKAGIRDE-PLKGKQLGMYFAKPSTRTRLSFEVGIRQLGGDALFLSAHDLQLQRGESIADTARVMSRFLDGIMIRTFSHREVVELAEWATIPVINGLTDEEHPCQVVADLLTALERFGTLPGLKLAYVGDGNNVAHSLMDGGAKFGMHVVVASPEGY 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SYNAS (Ornithine carbamoyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=argF PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.154e-43
Identity = 86/183 (46.99%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L I D +      I ++A  +K++ + G  ++ P KGKT+ MIF K S RTR+SFE G   LGG A++L   D Q+G+ E   D+AR++ RY + IM R F H  I + A  AT+PVINGLTD  HPCQI++D  TIIE  G  E  K+VYVGDGNN+ +SW+  A+ +PFH   +CP+G+
Sbjct:    4 DLLSIYDLEAGDFKAIFEKARHLKSVHEQGV-AYTPLKGKTLGMIFDKSSTRTRISFEVGMYQLGGLALFLSNRDTQLGRGETVADSARIMSRYLNGIMIRTFSHLIIEEFAAHATIPVINGLTDLLHPCQILSDLFTIIEKKGSYERLKIVYVGDGNNIANSWINAAARLPFHLALSCPEGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_OCEIH (Ornithine carbamoyltransferase OS=Oceanobacillus iheyensis GN=argF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.372e-42
Identity = 92/183 (50.27%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL ++D+ K  I  ++D A  +K   K G   F P KGKT+ MIF K S RTRVSFETG   LGG  I+L   DIQ+G+ E   D A+VL  Y D IM R F  +D+ +LAK A++PVINGLTD  HPCQ++AD  TI E  G+L G K+VY+GDGNN+ HS +L A+    H V   P G+
Sbjct:   19 DFLTLADYTKDEINYLIDLADYLKKQHKDGV-IFEPLKGKTLGMIFEKSSTRTRVSFETGIYQLGGLGIFLSSKDIQIGRGETIADTAKVLSGYLDGIMIRTFAQEDVEELAKHASIPVINGLTDLYHPCQVLADLQTIKEVKGKLHGVKLVYIGDGNNMTHSLMLGAAKTGMHMVAVTPDGY 200          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CARHZ (Ornithine carbamoyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=argF PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.285e-42
Identity = 90/183 (49.18%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL ++D     I ++LD A+E+K   K G  + +  KGKT++MIF+K S RTRVSFE G   LGG+ +++   D Q+ + E   D ARVL R  D IM R + H ++ +LA +A VPVINGLTDY HPCQIMAD LTI EH G+L G KV +VGDGNNV HS ++ A+ +      A P G+
Sbjct:    9 DFLSMNDLTGEEIEEVLDLASELKIRQKKGISTPI-LKGKTLAMIFSKNSTRTRVSFEVGMVQLGGYPLFITATDSQLSRGEPIADTARVLSRMVDGIMIRTYSHSEVEELAYYADVPVINGLTDYEHPCQIMADLLTIKEHKGQLRGLKVAWVGDGNNVCHSLMIGAAKVGMEVAVATPPGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METMJ (Ornithine carbamoyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=argF PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.015e-42
Identity = 87/181 (48.07%), Postives = 117/181 (64.64%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGD-RSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            DFL I D  +  +  I+  A  +K L  +G    FL  +GK++ MIF K S RTRVSFE G S LGGHA++L P D+Q+G+ EE RD ARVL RY D +M R + H  I + A++A VPV+NGL+D  HPCQ++AD +T+ E  G L G K+ +VGDGNNV +SWLL +++       A P
Sbjct:    4 DFLSILDIGEYELESIVADAVRLKRLKSAGTAHEFL--RGKSLGMIFEKASTRTRVSFEVGMSDLGGHALFLNPQDMQLGRGEEIRDTARVLARYVDAVMIRAYSHAAIEEFARYANVPVVNGLSDRLHPCQVLADIMTLSERFGDLHGLKLAWVGDGNNVCNSWLLSSALTGMEIAVASP 182          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ACIBY (Ornithine carbamoyltransferase OS=Acinetobacter baumannii (strain AYE) GN=arcB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.474e-41
Identity = 83/182 (45.60%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D     + +IL+RA+E+K + +S ++ + PF GK + MIF K S RTR+SFE G +  GG AI+L P D Q+G+ E   D+ARV+    DI+M R FGH  +   A ++ VPVINGLTD +HPCQ++AD  T IEH G +EG  V ++GDGNN+ +S++  A ++ F    A PKG+
Sbjct:    6 FLTLRDLSTLELNRILERASELKKMQQS-NKVYQPFVGKVLGMIFEKSSTRTRISFEAGINQFGGSAIFLSPRDTQLGRGEPIEDSARVISSMLDIVMIRTFGHDIVERFASYSKVPVINGLTDDHHPCQLLADLQTYIEHRGSIEGKTVAWIGDGNNMCNSYIEAAHMMGFKLKIASPKGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ACIBT (Ornithine carbamoyltransferase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=argF PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.474e-41
Identity = 83/182 (45.60%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D     + +IL+RA+E+K + +S ++ + PF GK + MIF K S RTR+SFE G +  GG AI+L P D Q+G+ E   D+ARV+    DI+M R FGH  +   A ++ VPVINGLTD +HPCQ++AD  T IEH G +EG  V ++GDGNN+ +S++  A ++ F    A PKG+
Sbjct:    6 FLTLRDLSTLELNRILERASELKKMQQS-NKVYQPFVGKVLGMIFEKSSTRTRISFEAGINQFGGSAIFLSPRDTQLGRGEPIEDSARVISSMLDIVMIRTFGHDIVERFASYSKVPVINGLTDDHHPCQLLADLQTYIEHRGSIEGKTVAWIGDGNNMCNSYIEAAHMMGFKLKIASPKGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METMA (Ornithine carbamoyltransferase OS=Methanosarcina mazei GN=argF PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.844e-41
Identity = 86/183 (46.99%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L I+D  +  I ++L+ AA++K   K+G+ +    K K++ MIF K S RTRVSFE   S  GGHA+YL   DIQ+G+ E   D AR L  Y   IMARV  H  +  LA+F+T+PVIN L+D  HPCQI+ D +TI+E+  R EG K  ++GDGNNV +S LL ++++   FV ACP+G+
Sbjct:    4 DVLSITDLSREEIYELLESAADLKKKRKAGEPTEY-LKHKSLGMIFEKSSTRTRVSFEVAMSDFGGHALYLNSRDIQVGRGETIEDTARTLSGYLHGIMARVMSHDTVEKLARFSTIPVINALSDREHPCQILGDFMTIMEYKNRFEGLKFAWIGDGNNVCNSALLGSAIMGMEFVIACPEGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PELCD (Ornithine carbamoyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=argF PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.632e-41
Identity = 82/183 (44.81%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL ++D+    +  +   AA++KA  K+G++  L  KGKT+ M+F K S RTRVSFE G   LGGHA++L     QMG+ E  +D  RV+ RY D IM R F  + + +LA+++T+P+INGLTD  HPCQ+MAD LT+IEH          ++GDGNN+ +SW+  A++  F    A PKG+
Sbjct:    4 DFLCLTDWSLEELENLFTLAADLKAKQKAGEQHHL-LKGKTLGMLFEKSSTRTRVSFEVGMYQLGGHALFLSSGSTQMGRGEPIKDTGRVMSRYVDGIMIRTFSQEGVEELAQWSTIPIINGLTDMYHPCQVMADLLTVIEHKKNYRDLTYCWIGDGNNMANSWINAAAMFGFELRVATPKGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PSYA2 (Ornithine carbamoyltransferase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=argF PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.302e-40
Identity = 83/182 (45.60%), Postives = 117/182 (64.29%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL +SDF K  +  ++ RA+E++ +  +G+  + PF G+T+ MIF K S RTR+SFETG    GG+AI+L P+D Q+G+ E   D+ARV+    DIIM R FGH+ +   AK+++VP+IN LTD  HPCQ++AD  T  EH G +E   V +VGDGNN+  S++  A    F    A P GF
Sbjct:    6 FLTLSDFTKQELENLIKRASELRKMQHAGE-IYQPFVGRTLGMIFEKSSTRTRISFETGMGQFGGNAIFLSPNDTQLGRGEPLEDSARVISSMVDIIMIRTFGHEKVETFAKYSSVPIINALTDEFHPCQLLADMQTYYEHRGSIENKIVTWVGDGNNMCASFMQAAHQFGFELRVAAPYGF 186          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_SYMTH4.780e-4347.54Ornithine carbamoyltransferase OS=Symbiobacterium ... [more]
OTC_SYNAS8.154e-4346.99Ornithine carbamoyltransferase OS=Syntrophus acidi... [more]
OTC_OCEIH2.372e-4250.27Ornithine carbamoyltransferase OS=Oceanobacillus i... [more]
OTC_CARHZ5.285e-4249.18Ornithine carbamoyltransferase OS=Carboxydothermus... [more]
OTC_METMJ9.015e-4248.07Ornithine carbamoyltransferase OS=Methanoculleus m... [more]
OTC_ACIBY4.474e-4145.60Ornithine carbamoyltransferase OS=Acinetobacter ba... [more]
OTC_ACIBT4.474e-4145.60Ornithine carbamoyltransferase OS=Acinetobacter ba... [more]
OTC_METMA5.844e-4146.99Ornithine carbamoyltransferase OS=Methanosarcina m... [more]
OTC_PELCD7.632e-4144.81Ornithine carbamoyltransferase OS=Pelobacter carbi... [more]
OTC_PSYA21.302e-4045.60Ornithine carbamoyltransferase OS=Psychrobacter ar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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