FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878130_ssr83 microsatellite FC878130_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:17..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METAC (Ornithine carbamoyltransferase OS=Methanosarcina acetivorans GN=argF PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.302e-40
Identity = 86/183 (46.99%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L I+D  K  I ++L+ AA++KA  K+G+ +    K K++ MIF K S RTRVSFE   +  GGHA+YL   DIQ+G+ E   D AR L  Y   +MARV  H  +  LAK++T+PVIN L+D  HPCQI+ D +TI+E   + EG K  +VGDGNNV +S LL ++++   F  ACPKG+
Sbjct:    4 DVLSITDLSKEEIYELLESAADLKAKRKAGESTEY-LKNKSLGMIFEKSSTRTRVSFEVAMTDFGGHALYLNSRDIQVGRGETIEDTARTLSGYLHGLMARVMSHDTVEKLAKYSTMPVINALSDREHPCQILGDFMTIMEFKKKFEGLKFAWVGDGNNVCNSALLGSAIMGMEFAVACPKGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_THICR (Ornithine carbamoyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=argF PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.221e-40
Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + DF  A + +++ RA E+K + KSG+  F P K KT++MIF K S RTR+SFE G S LGGHA++L P D Q+G+ E   D A+V+    D IM R FGH+ +  +A+ + VPVIN LTD  HPCQ++AD  T  EH G +EG  V++VGDGNN+ HS++  A    F    + P+ +
Sbjct:    6 FLTLQDFSPAELKQLMLRAIELKKIQKSGE-IFEPLKNKTLAMIFEKSSTRTRISFEIGMSQLGGHALFLSPRDTQLGRGEPIEDTAKVISSMADGIMIRTFGHEVVEKMAEHSQVPVINALTDDYHPCQLLADMQTYYEHRGSIEGKTVLWVGDGNNMCHSYINAAKQYGFKLRISAPEDY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACHD (Ornithine carbamoyltransferase OS=Bacillus halodurans GN=argF PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.221e-40
Identity = 86/184 (46.74%), Postives = 117/184 (63.59%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + D+    + ++L +A E+K   K+G+ +  P+  GK++ MIF   S RTRVSFE G + LGGHA++L P D+Q+G+ E  +D A VL RY D IM R   H+ + +LA +ATVPVIN LTD  HPCQ +ADALTI+E    L G K+ Y+GDGNNV HS L + +        A PKG+
Sbjct:   15 DLLTLLDYTPEEVQQLLTQALELKQKAKNGEPT--PYLTGKSLGMIFENASTRTRVSFEVGMTQLGGHALFLSPKDLQIGRGEPIKDTANVLSRYVDAIMIRTNSHESVEELAHYATVPVINALTDAYHPCQALADALTILEKKETLIGKKLAYIGDGNNVCHSLLAIGAKTGMDVTVATPKGY 196          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CAMFF (Ornithine carbamoyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=argF PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.788e-40
Identity = 90/183 (49.18%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL ++D DK  I+ IL  A ++K   KS  R+++ + K +T++MIF K S RTRVSFE G   LGG  ++L   DIQ+G+ E  +D ARVL R  D+IMARV+   D+ +LAKF+ VPVINGL+D  HP Q+M+D LT+ E    L+  KV YVGDGNN+ +SWL+ AS + F    A PKG+
Sbjct:    4 FLTLNDLDKNEILDILSLAKDIKKEAKS--RNYISYLKDQTLAMIFEKSSTRTRVSFEVGIHQLGGKGLFLSSRDIQLGRGEPVKDTARVLGRMVDMIMARVYKQSDLEELAKFSGVPVINGLSDDFHPVQLMSDLLTLSELGLNLQTMKVAYVGDGNNMTNSWLMAASKLGFELRVATPKGY 184          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METS3 (Ornithine carbamoyltransferase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=argF PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.947e-40
Identity = 85/184 (46.20%), Postives = 119/184 (64.67%), Query Frame = 1
Query:  256 TDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            ++ L + D  K  ++ IL+ A       K G     P  GK+++MIF K S RTRVSF+ G   LGG A++L   ++QMG+ E   D A+VL R+ D IM R   H D+++LAK++ VPVI+GLT+  HPCQ +AD LTI EH+G+LEG K+ +VGDGNNV +S LLMA ++      ACP+G+
Sbjct:    2 SNLLSVCDI-KDEVLDILELAKN----FKEGKMEEKPLAGKSLAMIFQKSSTRTRVSFDVGMYQLGGQALFLSSSELQMGRGEPIPDTAKVLSRFVDGIMIRAIEHDDVVELAKYSDVPVISGLTNLEHPCQALADMLTIQEHLGKLEGKKLCFVGDGNNVCNSLLLMAPLVGMDMSVACPEGY 180          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PSYCK (Ornithine carbamoyltransferase OS=Psychrobacter cryohalolentis (strain K5) GN=argF PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.461e-40
Identity = 82/182 (45.05%), Postives = 116/182 (63.74%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL +SD  K  +  ++ RA+E++ +  +G+  + PF G+T+ MIF K S RTR+SFETG    GG AI+L P+D Q+G+ E   D+ARV+    DIIM R FGH+ +   AK+++VP+IN LTD  HPCQ++AD  T  EH G +E   V +VGDGNN+  S++  A+   F    A P GF
Sbjct:    6 FLTLSDLTKQELENLIKRASELRHMQHAGE-IYQPFVGRTLGMIFEKSSTRTRISFETGMGQFGGSAIFLSPNDTQLGRGEPIEDSARVISSMVDIIMIRTFGHEKVETFAKYSSVPIINALTDEFHPCQLLADMQTYYEHRGSIENKIVTWVGDGNNMCASYMQAANQFGFELRVAAPYGF 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_STRRT (Putrescine carbamoyltransferase OS=Streptococcus ratti GN=ptcA PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.102e-39
Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            ++TD++   DF K  ++K++D + ++KA +K+G    L  + K++ MIF + S RTRVSFET  S LGGHA YL P  IQ+G  E   D + VL R +DI+MARV  HQ ++DLA+ A++PVING++DYNHP Q + D  T+IEH+    +LE  KVV+VGD   V  S  L+ + +   FV   PKGF
Sbjct:    3 KKTDYITTEDFSKEELLKLVDLSLKIKACIKNGYYPPL-LEHKSLGMIFQQTSTRTRVSFETAMSQLGGHAQYLAPGQIQLGGHETIEDTSTVLSRLDDILMARVERHQSVVDLARCASIPVINGMSDYNHPTQELGDLCTMIEHLPAGKKLEDCKVVFVGDATQVCFSLALITTKMGMEFVHFGPKGF 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_STRMU (Putrescine carbamoyltransferase OS=Streptococcus mutans GN=ptcA PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.102e-39
Identity = 87/189 (46.03%), Postives = 123/189 (65.08%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            ++TD++   DF K  ++K++D + ++KA +K+G    L  + K++ MIF + S RTRVSFET  S LGGHA YL P  IQ+G  E   D + VL R +DI+MARV  HQ ++DLA+ A++PVING++DYNHP Q + D  T+IEH+    +LE  KVV+VGD   V  S  L+ + +   FV   PKGF
Sbjct:    3 KKTDYITTEDFSKEELLKLVDLSLKIKACIKNGYYPPL-LEHKSLGMIFQQTSTRTRVSFETAMSQLGGHAQYLAPGQIQLGGHETIEDTSTVLSRLDDILMARVERHQSVVDLARCASIPVINGMSDYNHPTQELGDLCTMIEHLPAGKKLEDCKVVFVGDATQVCFSLALITTKMGMEFVHFGPKGF 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_WOLSU (Ornithine carbamoyltransferase OS=Wolinella succinogenes GN=argF PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.102e-39
Identity = 87/182 (47.80%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + DF    I++IL  + E+K  LK G R  L  +GK + MIF K S RTRVSFE+G   LGG  ++L   DIQ+G+ E  +D ARV+ R  D++M R  GH+ I + AK++ VPV+NGLTD  HP Q+MAD LT++E  G+ +   V YVGDGNN+ HSWL++AS + F    A P+G+
Sbjct:    4 FLTLKDFSAQEILEILALSKEIKDDLKKGIRPPL-MQGKVLGMIFEKSSTRTRVSFESGIYQLGGMGMFLSNRDIQLGRGEPMKDTARVISRMVDMVMIRTSGHERIEEFAKYSQVPVVNGLTDSYHPVQLMADYLTMMEQ-GKDQNPIVAYVGDGNNMTHSWLMLASKLGFELRVATPRGY 183          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ACIAD (Ornithine carbamoyltransferase OS=Acinetobacter sp. (strain ADP1) GN=argF PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.102e-39
Identity = 82/182 (45.05%), Postives = 114/182 (62.64%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D     +  ILDRA+E+K   +  ++ + PFKGK + MIF K S RTR+SFE G    GG AI+L P D Q+G+ E   D+ARV+    DI+M R FGH  +   A F+ VPVINGLTD +HPCQ++AD  T  EH G ++G  V ++GDGNN+ +S++  A ++ F      PKG+
Sbjct:    6 FLTLRDLSSLELNSILDRASELKRQ-QHANQVYQPFKGKVLGMIFEKSSTRTRISFEAGICQFGGSAIFLSPRDTQLGRGEPIEDSARVISSMLDIVMIRTFGHNIVERFASFSKVPVINGLTDDHHPCQLLADLQTYQEHRGSIKGKTVAWIGDGNNMCNSYMEAAHMMGFKLKVGSPKGY 186          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_METAC1.302e-4046.99Ornithine carbamoyltransferase OS=Methanosarcina a... [more]
OTC_THICR2.221e-4046.15Ornithine carbamoyltransferase OS=Thiomicrospira c... [more]
OTC_BACHD2.221e-4046.74Ornithine carbamoyltransferase OS=Bacillus halodur... [more]
OTC_CAMFF3.788e-4049.18Ornithine carbamoyltransferase OS=Campylobacter fe... [more]
OTC_METS34.947e-4046.20Ornithine carbamoyltransferase OS=Methanobrevibact... [more]
OTC_PSYCK6.461e-4045.05Ornithine carbamoyltransferase OS=Psychrobacter cr... [more]
PTC_STRRT1.102e-3946.03Putrescine carbamoyltransferase OS=Streptococcus r... [more]
PTC_STRMU1.102e-3946.03Putrescine carbamoyltransferase OS=Streptococcus m... [more]
OTC_WOLSU1.102e-3947.80Ornithine carbamoyltransferase OS=Wolinella succin... [more]
OTC_ACIAD1.102e-3945.05Ornithine carbamoyltransferase OS=Acinetobacter sp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
back to top