FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878130_ssr83 microsatellite FC878130_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:17..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_HALWD (Aspartate carbamoyltransferase OS=Haloquadratum walsbyi (strain DSM 16790) GN=pyrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:  253 QTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            Q   L  +   +  I  ILDRAA ++    + D     + G  + + F +PS RTR+SF+     LGG  I +G  D+  + K E   D  RV+  Y D I+ R          A+F  +PVIN G     HP Q + D  T+ E+VG L+   V   GD
Sbjct:    3 QDHLLSTTQLSREDIETILDRAAAIEM---NPDGWEAQYSGTVLGLCFFEPSTRTRMSFDAAMKRLGGRTIDMGSVDNSSISKGETLADTVRVIAGYADAIVLRHPSEGAAKLAAEFVDIPVINAGDGAGQHPTQTLLDLYTMRENVG-LDEITVGIAGD 158          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_COREF (Aspartate carbamoyltransferase OS=Corynebacterium efficiens GN=pyrB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 54/176 (30.68%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLP-FKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQDILDLAKFATV-----PVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASV 768
            L I+D  +  I+ +LD A   K +L+  +   LP  +G+T+  +F + S RTR SFET    +    I +      + K E  +D    L     D I+ R         LA +         VIN G   + HP Q + DALT+ + +G +EG K+V VGD   ++HS ++ ++V
Sbjct:    5 LSIADLSRDEIISLLDEADRFKEVLEGREVKKLPTLRGRTIFTLFYENSTRTRSSFETAGKWMSADVINISASSSSVKKGESLKDTGLTLSAIGADAIIMRHPSSGAAQQLAGYVAPGGVGPSVINAGDGSHQHPTQALLDALTLRQRLGGIEGRKIVIVGD---ILHSRVVRSNV 177          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_AERS4 (Aspartate carbamoyltransferase OS=Aeromonas salmonicida (strain A449) GN=pyrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 57/182 (31.32%), Postives = 85/182 (46.70%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACP 798
            + ISD  +  +  ++  A  +KA     D   L  K K ++  F + S RTR+SFET    LGG+ I          K+ ET  D+ +++  Y+D ++ R          ++F+ VPVING    N HP Q + D  +I E  G+L+G  V +VGD      VHS     S+    F    P
Sbjct:   11 ISISDLTRPDMELVVATAQRLKA---EPDTRLL--KDKLIASCFFEASTRTRLSFETAVQRLGGNIIGFADGGNTSAKKGETLADSIKIIGSYSDAVVMRHPKEGAARLASEFSRVPVINGGDGSNQHPTQTLLDLFSIHETQGKLDGLNVAFVGDLKYGRTVHSLAQALSLFNCRFFFISP 187          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_AERHH (Aspartate carbamoyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=pyrB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 57/183 (31.15%), Postives = 85/183 (46.45%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACPK 801
            + ISD  +  +  ++  A  +KA     D   L  K K ++  F + S RTR+SFET    LGG+ I          K+ ET  D+ +++  Y D ++ R          ++F+ VPVING    N HP Q + D  +I E  G+L+G  V +VGD      VHS     S+    F    P+
Sbjct:   11 ISISDLTRPDMELVVATAQRLKA---EPDTRLL--KDKLVASCFFEASTRTRLSFETAVQRLGGNIIGFADGGNTSAKKGETLADSIKIIGSYTDAVVMRHPKEGAARLASEFSRVPVINGGDGSNQHPTQTLLDLFSIHETQGKLDGLNVAFVGDLKYGRTVHSLAQALSLFNCRFFFISPE 188          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_PYRKO (Aspartate carbamoyltransferase OS=Pyrococcus kodakaraensis GN=pyrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 55/181 (30.39%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFV 786
            D + I DF K  I  +L  A  ++  L   ++  L + +GK ++ +F +PS RTR+SFE+    LGG  I +       + K E   D  + + +Y+D+I+ R          A+ A +PVIN G     HP Q + D  TI +  G+++G  +  +GD      VHS   +A  + F+ V
Sbjct:    7 DVISIRDFSKEDIEFVLKVAERLEEELN--EKGSLDYARGKILATLFFEPSTRTRLSFESAMHRLGGSVIGFSSASSTSVKKGESLADTIKTVEQYSDVIVIRHPMEGAARLAAEVAGIPVINAGDGSNQHPTQTLLDLYTIKKAFGKIDGLTIGLLGDLKYGRTVHS---LAEALAFYDV 182          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_NATTJ (Aspartate carbamoyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pyrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 51/176 (28.98%), Postives = 81/176 (46.02%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVL--CRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASV 768
            ++   L + D +K+ I  ILD    +K +++  ++     KG +M  +F +PS RTR SFE     LG     +      + K E   D  + L     N I+M         L LA   +  +IN    Y+ HP Q + D  TI E+ G L+G KV  +GD   + HS +  +++
Sbjct:    4 QRKSLLGLKDMEKSEIESILDSTESMKEIVQRKNKKLPTLKGFSMVNLFYEPSTRTRSSFEMAGKYLGADTTNMSASASSVAKGENLIDTGKTLEAMGINLIVMRHPLAGAPRL-LANNLSCSIINAGDGYHEHPTQALLDMFTIKEYKGSLKGLKVTIIGD---IYHSRVARSNI 175          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_DESAP (Aspartate carbamoyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=pyrB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.694e-11
Identity = 54/185 (29.19%), Postives = 84/185 (45.41%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMAR--VFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS-------WLLMASVIPFHFV 786
            L ++D   A I + L+ A  +K ++    +     +GKT+  +F +PS RTR+SFE     L    + +        K E   D AR +     D+++ R    G   +  LA+   VPV+N G   + HP Q + D  T+ E    LEG K+V +GD   ++HS       W L    +  H V
Sbjct:    7 LGLADMPAAEINEFLENALPMKQIISRDIKKVPTLRGKTVVTLFYEPSTRTRMSFELAAKYLSADTVNVSASASSATKGESLADTARTIAALGADLVVLRHPCAGAPHL--LARMIDVPVVNAGDGMHEHPTQALLDLFTLREKRPDLEGLKLVIIGD---ILHSRVARSNIWALTRFGVDVHLV 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_ROSS1 (Aspartate carbamoyltransferase OS=Roseiflexus sp. (strain RS-1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  235 GKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHS 747
            GK +  +   L + DF    I +IL+ A  +K +L    +     +GKT+  +F + S RTR+SFE     L  + +        + K E   D  R L     D+++ R          A++    VIN G   + HP Q + D  T+ + +GR+EG KVV VGD   ++HS
Sbjct:    8 GKRRDRRRHVLDLDDFSTQEIEEILETAVSMKEVLGRAIKQVPTLRGKTIVNMFFEESTRTRISFELAGKALSANVVNFTARGSSVEKGESLIDTVRTLQALGADMLVMRHSESGAPYLAAQYFHGSVINAGDGRHAHPTQALLDLFTVRQRLGRIEGLKVVIVGD---ILHS 177          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_RHOE4 (Aspartate carbamoyltransferase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pyrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 56/189 (29.63%), Postives = 87/189 (46.03%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVK-ALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVL-CRYNDIIMARVFGHQDILDLAKFATV------PVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACP 798
            L I+D D+ + +++LD A   + ALL    R     +G+T+  +F + S RTRVSFE     +    I +      + K E  RD A  L     D ++ R         +AK+          VIN G   + HP Q + DALT+ + +G +EG ++  VGD   + V  S  L+ S++    V   P
Sbjct:    5 LSIADLDRESAVELLDEAERFEQALLGREVRKLPTLRGRTVMTVFFENSTRTRVSFEVAGKWMSADVINVSASSSSVSKGESLRDTAMTLRAAGADALIVRHPASGAAHQIAKWTGAADDGGPAVINAGDGTHEHPTQALLDALTLRQRLGDIEGKRIAIVGDILHSRVARSNALLLSMLGAEVVLVAP 193          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_LEPBP (Aspartate carbamoyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=pyrB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 54/187 (28.88%), Postives = 87/187 (46.52%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMAR--VFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACPK 801
            + L    F K  +  ++ +   + AL +SG ++F    GK ++ +F + S RTR+SFE     LGG  I  +G     + K E   D  +++  Y DI + R  V G   I   A    +PVIN G     HP Q + D  TI+   G+++G  + ++GD      +HS + +    P H     P+
Sbjct:    8 NILDTLQFSKDDLNYLITKTNRMNALHESG-KAFGILHGKLLASLFFEASTRTRMSFEAAMERLGGRLISTVGFQFSSISKGETLYDTMKMIEAYCDIAVIRHPVEGSSRI--AAGAVNIPVINAGDGAGQHPTQALLDLYTIVSEKGKIDGLNIAFIGDLKYGRTIHSLINLLRHYPVHLYLISPE 191          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_HALWD2.829e-1133.13Aspartate carbamoyltransferase OS=Haloquadratum wa... [more]
PYRB_COREF2.829e-1130.68Aspartate carbamoyltransferase OS=Corynebacterium ... [more]
PYRB_AERS42.829e-1131.32Aspartate carbamoyltransferase OS=Aeromonas salmon... [more]
PYRB_AERHH2.829e-1131.15Aspartate carbamoyltransferase OS=Aeromonas hydrop... [more]
PYRB_PYRKO3.694e-1130.39Aspartate carbamoyltransferase OS=Pyrococcus kodak... [more]
PYRB_NATTJ3.694e-1128.98Aspartate carbamoyltransferase OS=Natranaerobius t... [more]
PYRB_DESAP3.694e-1129.19Aspartate carbamoyltransferase OS=Desulforudis aud... [more]
PYRB_ROSS14.825e-1130.06Aspartate carbamoyltransferase OS=Roseiflexus sp. ... [more]
PYRB_RHOE44.825e-1129.63Aspartate carbamoyltransferase OS=Rhodococcus eryt... [more]
PYRB_LEPBP4.825e-1128.88Aspartate carbamoyltransferase OS=Leptospira bifle... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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