FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878130_ssr83 microsatellite FC878130_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:17..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NITWN (Ornithine carbamoyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=argF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.031e-37
Identity = 83/180 (46.11%), Postives = 108/180 (60.00%), Query Frame = 1 
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPK 801
            FL + D     +  ILD +  +K   K G  +  P  GKT++MIF KPS RTRVSF+ G   LGG AI L   ++Q+G+ E   D A+VL R+ DIIM R+  H  + +LA  ATVPVINGLT  +HPCQ+MAD +T  EH G +EG  V + GD NNV+ SW   A    F+   A P+
Sbjct:    8 FLDLLDMSTGELRAILDASVAMKKRRKEGLIADKPLAGKTLAMIFDKPSTRTRVSFDVGMRQLGGEAIMLTGAEMQLGRGETIADTAKVLSRFVDIIMIRILSHDALTELAAHATVPVINGLTRRSHPCQVMADVMTFEEHRGPIEGRTVAWTGDDNNVLASWAHAAERFSFNLNVATPQ 187
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BRUME (Ornithine carbamoyltransferase OS=Brucella melitensis GN=argF PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.031e-37
Identity = 85/181 (46.96%), Postives = 113/181 (62.43%), Query Frame = 1 
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF K S RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA++ATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGNNV+HS +  A+   F+   A PKG
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKG 189
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BRUAB (Ornithine carbamoyltransferase OS=Brucella abortus GN=argF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.031e-37
Identity = 85/181 (46.96%), Postives = 113/181 (62.43%), Query Frame = 1 
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF K S RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA++ATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGNNV+HS +  A+   F+   A PKG
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKG 189
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BRUA2 (Ornithine carbamoyltransferase OS=Brucella abortus (strain 2308) GN=arcB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.031e-37
Identity = 85/181 (46.96%), Postives = 113/181 (62.43%), Query Frame = 1 
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF K S RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA++ATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGNNV+HS +  A+   F+   A PKG
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKG 189
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHOP5 (Ornithine carbamoyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=argF PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.347e-37
Identity = 85/183 (46.45%), Postives = 112/183 (61.20%), Query Frame = 1 
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGD-RSFL---PFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL + +     +  +LD    +KA LKS   R+ L   P +GKT++MIF +PS RTRVSF+ G   LGG +I L   ++Q+G+ E   D ARVL RY D IM R+  H  +L+LA+FATVPVINGLT  +HPCQ+MAD +T  EH G +EG  + + GD NNV+ SW   A    F    A P
Sbjct:    8 FLDLDEMPTKELRAVLDAGVALKAKLKSQKARNTLREKPLEGKTLAMIFERPSTRTRVSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAEFATVPVINGLTRRSHPCQVMADLMTFEEHRGPIEGRTIAWTGDDNNVLASWAHAAERFNFTLRIATP 190
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACAN (Ornithine carbamoyltransferase OS=Bacillus anthracis GN=argF PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.347e-37
Identity = 82/189 (43.39%), Postives = 114/189 (60.32%), Query Frame = 1 
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGY 190
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACAC (Ornithine carbamoyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=arcB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.347e-37
Identity = 82/189 (43.39%), Postives = 114/189 (60.32%), Query Frame = 1 
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGY 190
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACAA (Ornithine carbamoyltransferase OS=Bacillus anthracis (strain A0248) GN=arcB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.347e-37
Identity = 82/189 (43.39%), Postives = 114/189 (60.32%), Query Frame = 1 
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGY 190
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NITHX (Ornithine carbamoyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=argF PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.759e-37
Identity = 83/179 (46.37%), Postives = 107/179 (59.78%), Query Frame = 1 
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL + D     +  ILD +  +K   K G  +  P  GKT++MIF KPS RTRVSF+ G   LGG AI L   ++Q+G+ E   D ARVL R+ DIIM R+  H  + +LA  ATVPVINGLT  +HPCQ+MAD +T  EH G ++G  V + GD NNV+ SW   A    F+   A P
Sbjct:    8 FLDLFDVPTTELRAILDASVAMKKRRKEGRIADKPLDGKTLAMIFDKPSTRTRVSFDVGMRQLGGEAIMLTGAEMQLGRGETIADTARVLSRFVDIIMIRILSHDALTELAAHATVPVINGLTRRSHPCQVMADVMTFEEHRGPIKGRTVAWTGDDNNVLASWAHAADRFSFNLNVATP 186
[Close]
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACC3 (Ornithine carbamoyltransferase OS=Bacillus cereus (strain 03BB102) GN=arcB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.759e-37
Identity = 82/189 (43.39%), Postives = 114/189 (60.32%), Query Frame = 1 
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPIGY 190
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_NITWN1.031e-3746.11Ornithine carbamoyltransferase OS=Nitrobacter wino... [more]
OTC_BRUME1.031e-3746.96Ornithine carbamoyltransferase OS=Brucella meliten... [more]
OTC_BRUAB1.031e-3746.96Ornithine carbamoyltransferase OS=Brucella abortus... [more]
OTC_BRUA21.031e-3746.96Ornithine carbamoyltransferase OS=Brucella abortus... [more]
OTC_RHOP51.347e-3746.45Ornithine carbamoyltransferase OS=Rhodopseudomonas... [more]
OTC_BACAN1.347e-3743.39Ornithine carbamoyltransferase OS=Bacillus anthrac... [more]
OTC_BACAC1.347e-3743.39Ornithine carbamoyltransferase OS=Bacillus anthrac... [more]
OTC_BACAA1.347e-3743.39Ornithine carbamoyltransferase OS=Bacillus anthrac... [more]
OTC_NITHX1.759e-3746.37Ornithine carbamoyltransferase OS=Nitrobacter hamb... [more]
OTC_BACC31.759e-3743.39Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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