FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878130_ssr83 microsatellite FC878130_ssr83:83..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5823 contig Ccv1_Contig5823:17..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NITEC (Ornithine carbamoyltransferase OS=Nitrosomonas eutropha (strain C91) GN=argF PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.119e-37
Identity = 82/182 (45.05%), Postives = 106/182 (58.24%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL   DFD+     + DR   +K   K   R + P   +T++MIF K S RTR+SFE G   LGG AIYL   D Q+G+ E   DAARV+ R  DII  R   HQ I   A+ + VPVINGLTD  HPCQI+AD  T IEH G + G  + ++GD NNV ++WL  A +  F+   + P G+
Sbjct:    6 FLQFKDFDRLEFEYLFDRTRWIKNEFKQY-RRYWPLTDRTLAMIFEKHSTRTRLSFEAGMHQLGGSAIYLSTRDTQLGRGEPVEDAARVISRMVDIITIRTHEHQIIERFAENSRVPVINGLTDEYHPCQILADIFTFIEHRGSITGKTITWIGDSNNVCNTWLQAAEIFDFNVHVSTPPGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RANCA (Ornithine carbamoyltransferase, mitochondrial OS=Rana catesbeiana PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.686e-37
Identity = 79/183 (43.17%), Postives = 115/183 (62.84%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + ++    I  +L  AA++K  +K         +GK+++MIF K S RTR+S ETGF+LLGGH  +L   DI +G  E  +D ARVL    D ++ARV+   D+  LA+ A++P++NGL+D  HP QI+AD LTI EH G L+G  + ++GDGNNV+HS ++ A+    H   A PKG+
Sbjct:   37 DLLTLKNYSAEEIKYLLWVAADLKYRIKEKGEYLPLLQGKSLAMIFEKRSTRTRLSTETGFALLGGHPSFLTTQDIHLGVNESLKDTARVLSGMTDAVLARVYHQSDLEVLAEEASIPIVNGLSDDYHPIQILADYLTIQEHYGHLKGLTISWIGDGNNVLHSIMMSAAKFGMHLHIATPKGY 219          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_LISMF (Ornithine carbamoyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=argF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.732e-37
Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query:  226 SIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +++ K      D L + +++K  +  I+  A  +K        S +   GK + MIF KPS RTRVSFE G   LGG AI +   ++Q+G+ E  +D A V+  Y D IM R F H+ + +LA  A +P+INGLTD +HPCQ +AD +TI E   +LEG K+ Y+GDGNNV HS LL  +++      A PKG+
Sbjct:    2 TMYAKNNTAGKDMLSLLEWNKEELTDIIKLAVAMKT--NPAHYSHI-LSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGVKLAYIGDGNNVCHSLLLAGAMVGIDICLAMPKGY 192          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_HYPBU (Ornithine carbamoyltransferase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=argF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.732e-37
Identity = 84/195 (43.08%), Postives = 118/195 (60.51%), Query Frame = 1
Query:  220 PNSIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNVVHSWLLMASVIPFHFVCACPK 801
            P  ++G+      D L I D     +  +++ A ++K    +G+R     KGKT+++IF KPS RTRVS E     LG   +    D++Q+ + E  +D ARVL RY D I ARVF H+ + ++A +A+VPVIN L+D  HP Q +ADALTI E  G ++G KVVYVGDG NNV HS LL+ + +  H V + PK
Sbjct:    2 PGPLYGR------DLLSIRDLSSEEVWLVIETARQMKLRYYAGERIIPMLKGKTIALIFEKPSTRTRVSMEVAALQLGATPLTFRRDELQLARGEPIKDTARVLSRYVDAIAARVFKHESLEEMAAYASVPVINMLSDLEHPLQALADALTIYEKKGHIKGIKVVYVGDGRNNVAHSLLLVIAKLGGHIVISSPK 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_DESDG (Ornithine carbamoyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=argF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.732e-37
Identity = 82/182 (45.05%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            F  I D        +L RA E+K    S  RS L  +GK+  M+F K S RTRVSFET    LGG  I++ P + Q+G+ E  RD ARVL RYND+++ R FG + I +L ++ ++PVIN LTD  HPCQ+M+D LTI E    LE  +V +VGDGNN+ +SW+  A    F    A P+G+
Sbjct:    5 FTQIRDLGYQAAWDVLRRAKEMK---DSRHRSTL-LEGKSAIMLFEKASTRTRVSFETAVHQLGGKTIFMTPAESQLGRSEPLRDTARVLSRYNDLMIVRTFGQEKIDELVEYGSIPVINALTDEGHPCQVMSDMLTIYERTPDLEKVRVAWVGDGNNMANSWIEAAIFFKFELFMAFPEGY 182          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_AERPE (Ornithine carbamoyltransferase OS=Aeropyrum pernix GN=argF PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 8.732e-37
Identity = 76/179 (42.46%), Postives = 114/179 (63.69%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNVVHSWLLMASVIPFHFVCACP 798
            L ++D+    I  +++   E+K    +G+R     +G+++ ++F KPS RTR+S E   + LGGH +Y+ P + Q+G+ E   D ARVL RY D I+ARV  H+ + ++A+ A++PVINGL+D  HP Q +AD  TI+E  GRLEG K+ +VGDG +NV+HS LL  S +  H   A P
Sbjct:   12 LWLADYTGEEIRHMVELTLEMKRRYYAGERVIPVLRGRSVGLLFEKPSTRTRISLEVAVAQLGGHTVYMTPSETQLGRGETVADTARVLSRYLDAIVARVRSHKTLEEMARHASIPVINGLSDLTHPLQAIADMATILEKKGRLEGVKLAFVGDGADNVLHSLLLAGSKLGLHITVATP 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PROMM (Ornithine carbamoyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=argF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.489e-36
Identity = 80/183 (43.72%), Postives = 110/183 (60.11%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL  +DF     + +L    E+   LKSGDR  +    + + +IF K S RTRVSF+   + LGG  + L P   Q+G+ E   D ARVL R+ D++  R F  Q++LD A +A++PV+N LTD  HPCQ MAD LTI E +G L G  + YVGDGNNV HS +L  +++  +    CP+GF
Sbjct:   19 DFLSCADFTAEQTVALL----ELSRQLKSGDRR-IDLGNRVLGLIFTKASTRTRVSFQVAMARLGGQTVDLNPQVTQLGRGEPLEDTARVLSRFCDVMAVRTFAQQELLDYAHWASIPVLNALTDLEHPCQAMADFLTIQEALGSLTGQTLAYVGDGNNVSHSLMLCGALLGVNVRIGCPQGF 196          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_LISMO (Ornithine carbamoyltransferase OS=Listeria monocytogenes GN=argF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.489e-36
Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query:  226 SIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +++ K      D L + +++K  +  I+  A  +K        S +   GK + MIF KPS RTRVSFE G   LGG AI +   ++Q+G+ E  +D A V+  Y D IM R F H+ + +LA  A +P+INGLTD +HPCQ +AD +TI E   +LEG K+ Y+GDGNNV HS LL  +++      A PKG+
Sbjct:    2 TMYAKNNTSGKDMLSLLEWNKEELTDIIKLAVAMKT--NPAHYSHI-LSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGIKLAYIGDGNNVCHSLLLAGAMVGIDIRLAMPKGY 192          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_LISMH (Ornithine carbamoyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=arcB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.489e-36
Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query:  226 SIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +++ K      D L + +++K  +  I+  A  +K        S +   GK + MIF KPS RTRVSFE G   LGG AI +   ++Q+G+ E  +D A V+  Y D IM R F H+ + +LA  A +P+INGLTD +HPCQ +AD +TI E   +LEG K+ Y+GDGNNV HS LL  +++      A PKG+
Sbjct:    2 TMYAKNNTAGKDMLSLLEWNKEELTDIIKLAVAMKT--NPAHYSHI-LSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGVKLAYIGDGNNVCHSLLLAGAMVGLDIRLAMPKGY 192          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_LISIN (Ornithine carbamoyltransferase OS=Listeria innocua GN=argF PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.489e-36
Identity = 80/194 (41.24%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  226 SIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +++ K      D L + +++K  ++ I+  A  +K        S +   GK + MIF KPS RTRVSFE G   LGG AI +   ++Q+G+ E  +D A V+  Y D IM R F H+ + +LA  A +P+INGLTD +HPCQ +AD +TI E   +LEG K+ Y+GDGNNV HS LL  +++      A PKG+
Sbjct:    2 TMYVKSNTTGKDMLSLLEWNKEELIDIIKLAVAMKT--NPAHYSHI-LSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGVKLAYIGDGNNVCHSLLLAGAMVGLDIRLAMPKGY 192          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_NITEC5.119e-3745.05Ornithine carbamoyltransferase OS=Nitrosomonas eut... [more]
OTC_RANCA6.686e-3743.17Ornithine carbamoyltransferase, mitochondrial OS=R... [more]
OTC_LISMF8.732e-3741.24Ornithine carbamoyltransferase OS=Listeria monocyt... [more]
OTC_HYPBU8.732e-3743.08Ornithine carbamoyltransferase OS=Hyperthermus but... [more]
OTC_DESDG8.732e-3745.05Ornithine carbamoyltransferase OS=Desulfovibrio de... [more]
OTC_AERPE8.732e-3742.46Ornithine carbamoyltransferase OS=Aeropyrum pernix... [more]
OTC_PROMM1.489e-3643.72Ornithine carbamoyltransferase OS=Prochlorococcus ... [more]
OTC_LISMO1.489e-3641.24Ornithine carbamoyltransferase OS=Listeria monocyt... [more]
OTC_LISMH1.489e-3641.24Ornithine carbamoyltransferase OS=Listeria monocyt... [more]
OTC_LISIN1.489e-3641.24Ornithine carbamoyltransferase OS=Listeria innocua... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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