FC917820

Overview
NameFC917820
Unique NameFC917820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length906
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN1_XENTR (Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.181e-72
Identity = 131/230 (56.96%), Postives = 175/230 (76.09%), Query Frame = 2
Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H++ EGH+ VY+RGGALL     PG+H+  P IT++  VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +R+Y   YDKT I++KIHHE+NQFCSSH+LQ+VYI++FDQIDE +K +LQ++    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA ++QKV EKEAET +K A+ E EK A V+KI   QK+MEK++ +   EI++  YLAR
Sbjct:   24 HKVEEGHLAVYYRGGALLGGPGDPGYHIMFPFITYFRSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNMLTPSAVYDVVRNYTADYDKTLIFNKIHHELNQFCSSHTLQEVYIELFDQIDENLKLSLQMELNVMAPGLTIQAVRVTKPKIPEAIRRNFELMESEKTKLLIAEQRQKVVEKEAETERKKAVIEAEKVAQVAKIQYRQKVMEKETEKFISEIEDSAYLAR 253          
BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERL2A_XENLA (Erlin-2-A OS=Xenopus laevis GN=erlin2-A PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.543e-72
Identity = 134/230 (58.26%), Postives = 176/230 (76.52%), Query Frame = 2
Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGHVGVY+RGGALL T + PGFHL  P IT ++ VQ TLQTD++ ++PCGT GGVMI F++IEVVN L    VY+ ++++   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APGI I +VRVTKP IP+ I RNFE ME E+T++LIA +KQKV EKEAET +K AI E EK A V++I  +QK+MEK++ +K  EI++  ++AR
Sbjct:   24 HKIEEGHVGVYYRGGALLSTTSGPGFHLMFPFITSFKSVQSTLQTDEIKNVPCGTSGGVMIYFDRIEVVNYLISSAVYDIVKNFTADYDKALIFNKIHHELNQFCSVHNLQEVYIELFDQIDENLKLALQEDLNLMAPGIIIQAVRVTKPKIPEAIGRNFELMEGEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAQIKYKQKVMEKETEKKISEIEDFAFVAR 253          
BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_DANRE (Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.632e-72
Identity = 134/230 (58.26%), Postives = 172/230 (74.78%), Query Frame = 2
Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGHVGVY+RGGALL   + PGFHL LP IT ++ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY  +R++   YDK  I++K+HHE+NQFCS H+LQ VYI +FDQIDE +K  LQ D T  APG+ I +VRVTKP IP+ IRRN+E ME ERT++LIA + QKV EKEAET +K A+ E EK A V++I   QK+MEK++ +K  +I++  YLAR
Sbjct:   23 HKIEEGHVGVYYRGGALLTATSGPGFHLMLPFITTFKSVQTTLQTDEVKNVPCGTGGGVMIYFDRIEVVNYLVPSAVYGIVRNFTADYDKALIFNKVHHELNQFCSVHTLQDVYIGLFDQIDENLKLTLQEDLTSMAPGLIIQAVRVTKPNIPESIRRNYELMESERTKLLIAAQTQKVVEKEAETERKKAVIEAEKVAQVAEIKFGQKVMEKETEKKISQIEDSAYLAR 252          
BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN1_DANRE (Erlin-1 OS=Danio rerio GN=erlin1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.228e-71
Identity = 130/230 (56.52%), Postives = 173/230 (75.22%), Query Frame = 2
Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+ VY+RGGALL +   PG+H+ LP IT Y  VQ TLQTD++ ++PCGT GGVMI F++IEVVN L    V + +R+Y   YDKT I++KIHHE+NQFCS H+LQ+VYI++FD IDE +K ALQ D    APG+ I +VRVTKP IP+ IRRN+E ME E+TR+LI ++ QKV EKEAET +K AI E +K A V++I  +QK+MEK++ +K  EI++  +LAR
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPNGPGYHIMLPFITSYRSVQTTLQTDEIKNVPCGTSGGVMIYFDRIEVVNMLIPTSVVDIVRNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIELFDIIDENLKTALQKDLNCMAPGLTIQAVRVTKPKIPEAIRRNYELMEAEKTRLLITVQTQKVVEKEAETERKKAIIEAQKVAQVAEIQFQQKVMEKETEKKISEIEDAAFLAR 253          
The following BLAST results are available for this feature:
BLAST of FC917820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERLN1_XENTR1.181e-7256.96Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1[more]
ERL2A_XENLA1.543e-7258.26Erlin-2-A OS=Xenopus laevis GN=erlin2-A PE=2 SV=1[more]
ERLN2_DANRE2.632e-7258.26Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1[more]
ERLN1_DANRE2.228e-7156.52Erlin-1 OS=Danio rerio GN=erlin1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917820 ID=FC917820; Name=FC917820; organism=Citrus clementina; type=EST; length=906bp
CAAATTCTCTCGCGCACATTTTGGCAACAGTTGAAACCCCGCCATGGATC
CACAGCAACAAGGAGTAGGCGCTACACAGGCACAGCCTCGGCCTCAGCCT
CAGCCTGGCGATTCGTCTGCTATACTCGCCGTGTTCCTCACTTTCATCGC
TATTGTCTCACTGATATTGATCCCATCATCGTCATCCATCAAAAGTAGCC
TGGCCATTTTGCACCAAATTCCAGAAGGCCACGTTGGAGTATATTGGAGA
GGAGGTGCCCTTCTAGAGACAATTACACACCCAGGCTTCCATCTGAAGTT
GCCTTTGATAACACACTACGAGCCTGTTCAAGTGACCCTTCAGACAGATC
AGGTTACTGACATTCCATGTGGGACCAAAGGGGGTGTAATGATCAACTTT
GAGAAGATAGAGGTTGTTAACCGGCTTCGTAAGGAATATGTGTACGAGAC
TCTGCGCGACTATGGCGTGCAATATGACAAGACATGGATATATGACAAGA
TTCATCATGAGATCAATCAGTTCTGTAGTTCTCATAGTCTGCAACAAGTC
TATATTGATGTGTTTGATCAGATTGACGAAAAGATGAAGGATGCTCTTCA
GGTTGACTGCACGCGTTATGCTCCAGGCATTGAAATTATCAGTGTGCGTG
TTACAAAGCCTACTATTCCAGATAGAATCAGAAGAAATTTTGAACAAATG
GAAGAGGAACGTACTAGGGTGTTAATTGCTATTGAGAAACAGAAAGTAGC
TGAGAAAGAGGCAGAGACAAGCAAAAAGATGGCTATCAGTGAAACTGAGA
AGAATGCCAATGTTAGCAAGATCCTTATGGAACAGAAGTTGATGGAGAAG
GACAGTGCTCGGAAGCAGGAGGAAATTGACAATCAAATGTACTTGGCTCG
TTCAAG
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