FC917820 | Citrus Genome Database

Overview


Name	FC917820
Unique Name	FC917820
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	906

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_RAT (Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.400e-75
Identity = 136/230 (59.13%), Postives = 178/230 (77.39%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ E EK A V++I   QK+MEK++ +K  EI++  +LAR
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_PONAB (Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.400e-75
Identity = 136/230 (59.13%), Postives = 178/230 (77.39%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ E EK A V++I   QK+MEK++ +K  EI++  +LAR
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_MOUSE (Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.400e-75
Identity = 136/230 (59.13%), Postives = 178/230 (77.39%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ E EK A V++I   QK+MEK++ +K  EI++  +LAR
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_HUMAN (Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.400e-75
Identity = 136/230 (59.13%), Postives = 178/230 (77.39%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ E EK A V++I   QK+MEK++ +K  EI++  +LAR
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_BOVIN (Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.262e-74
Identity = 135/230 (58.70%), Postives = 178/230 (77.39%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+GVY+RGGALL + + PGFHL LP IT Y+ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D T  APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K A+ E EK A V++I   QK+MEK++ ++  EI++  +LAR
Sbjct:   24 HKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITFGQKVMEKETEKRISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERL2B_XENLA (Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.672e-74
Identity = 138/230 (60.00%), Postives = 177/230 (76.96%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGHVGVY+RGGALL T + PGFHL LP IT ++ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APGI I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K AI E EK A V++I   QK+MEK++ +K  EI++  +LAR
Sbjct:   24 HKIEEGHVGVYYRGGALLTTTSGPGFHLMLPFITSFKSVQSTLQTDEVKNVPCGTSGGVMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHNLQEVYIELFDQIDEDLKLALQKDLNLMAPGIIIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAQIKYGQKVMEKETEKKISEIEDFAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN2_XENTR (Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.796e-74
Identity = 135/230 (58.70%), Postives = 178/230 (77.39%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGHVGVY+RGGALL + + PGFHL LP IT ++ VQ T+QTD+V ++PCGT GGVMI F++IEVVN L    VY+ +++Y   YDKT I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRN+E ME E+T++LIA +KQKV EKEAET +K AI E EK A V++I   QK+MEK++ +K  EI++  ++AR
Sbjct:   24 HKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITSFKSVQSTMQTDEVKNVPCGTSGGVMIYFDRIEVVNYLIPSAVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHNLQEVYIELFDQIDENLKLALQKDLNSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAEIKYGQKVMEKETEKKISEIEDSAFVAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN1_MOUSE (Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.395e-73
Identity = 132/230 (57.39%), Postives = 177/230 (76.96%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+ VY+RGGALL + + PG+H+ LP IT +  VQ TLQTD+V ++PCGT GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ E EK A V+KI  +QK+MEK++ ++  EI++  +LAR
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN1_PONAB (Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.823e-73
Identity = 132/230 (57.39%), Postives = 177/230 (76.96%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+ VY+RGGALL + + PG+H+ LP IT +  VQ TLQTD+V ++PCGT GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ E EK A V+KI  +QK+MEK++ ++  EI++  +LAR
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAR 253

[Close]

BLAST of FC917820 vs. ExPASy Swiss-Prot
Match: ERLN1_HUMAN (Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.823e-73
Identity = 132/230 (57.39%), Postives = 177/230 (76.96%), Query Frame = 2

Query:  212 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISETEKNANVSKILMEQKLMEKDSARKQEEIDNQMYLAR 901
            H+I EGH+ VY+RGGALL + + PG+H+ LP IT +  VQ TLQTD+V ++PCGT GGVMI  ++IEVVN L    V++ +R+Y   YDKT I++KIHHE+NQFCS+H+LQ+VYI++FDQIDE +K ALQ D    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA +KQKV EKEAET +K A+ E EK A V+KI  +QK+MEK++ ++  EI++  +LAR
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIEDAAFLAR 253

The following BLAST results are available for this feature:

BLAST of FC917820 vs. ExPASy Swiss-Prot

BLAST of FC917820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
ERLN2_RAT	7.400e-75	59.13	Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1	[more]
ERLN2_PONAB	7.400e-75	59.13	Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1	[more]
ERLN2_MOUSE	7.400e-75	59.13	Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1	[more]
ERLN2_HUMAN	7.400e-75	59.13	Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1	[more]
ERLN2_BOVIN	1.262e-74	58.70	Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1	[more]
ERL2B_XENLA	3.672e-74	60.00	Erlin-2-B OS=Xenopus laevis GN=erlin2-B PE=2 SV=1	[more]
ERLN2_XENTR	4.796e-74	58.70	Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1	[more]
ERLN1_MOUSE	1.395e-73	57.39	Erlin-1 OS=Mus musculus GN=Erlin1 PE=2 SV=1	[more]
ERLN1_PONAB	1.823e-73	57.39	Erlin-1 OS=Pongo abelii GN=ERLIN1 PE=2 SV=2	[more]
ERLN1_HUMAN	1.823e-73	57.39	Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA99CE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CE10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC917820 ID=FC917820; Name=FC917820; organism=Citrus clementina; type=EST; length=906bp
CAAATTCTCTCGCGCACATTTTGGCAACAGTTGAAACCCCGCCATGGATC
CACAGCAACAAGGAGTAGGCGCTACACAGGCACAGCCTCGGCCTCAGCCT
CAGCCTGGCGATTCGTCTGCTATACTCGCCGTGTTCCTCACTTTCATCGC
TATTGTCTCACTGATATTGATCCCATCATCGTCATCCATCAAAAGTAGCC
TGGCCATTTTGCACCAAATTCCAGAAGGCCACGTTGGAGTATATTGGAGA
GGAGGTGCCCTTCTAGAGACAATTACACACCCAGGCTTCCATCTGAAGTT
GCCTTTGATAACACACTACGAGCCTGTTCAAGTGACCCTTCAGACAGATC
AGGTTACTGACATTCCATGTGGGACCAAAGGGGGTGTAATGATCAACTTT
GAGAAGATAGAGGTTGTTAACCGGCTTCGTAAGGAATATGTGTACGAGAC
TCTGCGCGACTATGGCGTGCAATATGACAAGACATGGATATATGACAAGA
TTCATCATGAGATCAATCAGTTCTGTAGTTCTCATAGTCTGCAACAAGTC
TATATTGATGTGTTTGATCAGATTGACGAAAAGATGAAGGATGCTCTTCA
GGTTGACTGCACGCGTTATGCTCCAGGCATTGAAATTATCAGTGTGCGTG
TTACAAAGCCTACTATTCCAGATAGAATCAGAAGAAATTTTGAACAAATG
GAAGAGGAACGTACTAGGGTGTTAATTGCTATTGAGAAACAGAAAGTAGC
TGAGAAAGAGGCAGAGACAAGCAAAAAGATGGCTATCAGTGAAACTGAGA
AGAATGCCAATGTTAGCAAGATCCTTATGGAACAGAAGTTGATGGAGAAG
GACAGTGCTCGGAAGCAGGAGGAAATTGACAATCAAATGTACTTGGCTCG
TTCAAG