FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  604 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREN 891
            G +  YQ+ GLNWL   +  G + ILADEMGLGKT+QT   L  L++     GP +V AP ST+ NW  E   + P +  V ++G+ + R  IREN
Sbjct:  717 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIREN 812          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  604 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREN 891
            G +  YQ+ GLNWL   +  G + ILADEMGLGKT+QT   L  L++     GP +V AP ST+ NW  E   + P +  V ++G+ + R  IREN
Sbjct:  724 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIREN 819          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14
Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            ++R+YQL G+NWL+  + N  N ILADEMGLGKT+Q+I+ L  +   RGI GP +++AP ST+ NW  E R +   + A+ + G+   R+ I++  +V
Sbjct:  460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMV 555          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  601 QGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLG 858
            +G +R YQ  G+NWL+ L E+G    LAD+MGLGKT+Q I+   ++ E      PH+++AP S LGNW  E++ F P L      G
Sbjct:  447 KGTLRPYQKYGMNWLLFLRESGFGACLADDMGLGKTIQMIAYFLHVKESGRQKTPHLIIAPTSVLGNWQRELQTFAPDLSVALHYG 532          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.270e-14
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  571 TRLVTQPSCIQG--KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            +R+  QP  +     +RDYQ+ GLNWL+  +    + ILADEMGLGKT+QTI  L  L +   + GP + V P ST+  W  E   + P +  V +LG+ + R  I++
Sbjct:  513 SRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQ 620          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            ++R+YQL GLNWL+  + N  N ILADEMGLGKT+Q+I+ L Y     GI GP +++AP ST+ NW  E R +  +   V + G+   R+ I++
Sbjct:  858 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQ 949          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            ++R+YQL GLNWL+  + N  N ILADEMGLGKT+Q+I+ L Y     GI GP +++AP ST+ NW  E R +  +   V + G+   R+ I++
Sbjct:  859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQ 950          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLG---YLH----------EFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            P  I+  +R YQ  G+NWL  L +  ++GIL D+MGLGKTLQTI ++    YL           E R +  P +++ P S  G+W NE  ++ P L+ V + G P  R  +R  L
Sbjct: 1265 PIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRAL--PSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQL 1377          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: MIT1_SCHPO (Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe GN=mit1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  565 SNTRLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            +N    +QPS I+G  +  YQL GLNWL   +      ILADEMGLGKT+Q IS +  L  +R    P +V+ P +T+ NW  E++++ P L+    +G+ + R  +R+  L+
Sbjct:  540 TNLEWHSQPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLF-YRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLI 651          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            ++R+YQL G+NWL+  + N  N ILADEMGLGKT+Q+I+LL  +    G+  P M++AP ST+ NW  E   +   + A+ + G+   R+ I++
Sbjct:  846 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMFS-AGVQSPFMIIAPLSTITNWEREFSNWTD-MNAIVYHGSLASRQMIQQ 937          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
CHD4_MOUSE1.468e-1443.75Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN1.468e-1443.75Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
CHD6_HUMAN1.917e-1442.86Chromodomain-helicase-DNA-binding protein 6 OS=Hom... [more]
YWQA_BACSU2.504e-1443.02Uncharacterized ATP-dependent helicase ywqA OS=Bac... [more]
CHD1_DROME4.270e-1438.89Chromodomain-helicase-DNA-binding protein 1 OS=Dro... [more]
CHD9_MOUSE1.243e-1344.68Chromodomain-helicase-DNA-binding protein 9 OS=Mus... [more]
CHD9_HUMAN1.243e-1344.68Chromodomain-helicase-DNA-binding protein 9 OS=Hom... [more]
MOT1_YEAST4.722e-1337.39TATA-binding protein-associated factor MOT1 OS=Sac... [more]
MIT1_SCHPO4.722e-1338.05Chromatin remodeling factor mit1 OS=Schizosaccharo... [more]
CHD8_DANRE4.722e-1341.49Chromodomain-helicase-DNA-binding protein 8 OS=Dan... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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