FC917857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14 Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 604 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREN 891 G + YQ+ GLNWL + G + ILADEMGLGKT+QT L L++ GP +V AP ST+ NW E + P + V ++G+ + R IREN Sbjct: 717 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIREN 812
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14 Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 604 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREN 891 G + YQ+ GLNWL + G + ILADEMGLGKT+QT L L++ GP +V AP ST+ NW E + P + V ++G+ + R IREN Sbjct: 724 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIREN 819
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD6_HUMAN (Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6 PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 1.917e-14 Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 1 Query: 607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900 ++R+YQL G+NWL+ + N N ILADEMGLGKT+Q+I+ L + RGI GP +++AP ST+ NW E R + + A+ + G+ R+ I++ +V Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMV 555
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: YWQA_BACSU (Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14 Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 601 QGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLG 858 +G +R YQ G+NWL+ L E+G LAD+MGLGKT+Q I+ ++ E PH+++AP S LGNW E++ F P L G Sbjct: 447 KGTLRPYQKYGMNWLLFLRESGFGACLADDMGLGKTIQMIAYFLHVKESGRQKTPHLIIAPTSVLGNWQRELQTFAPDLSVALHYG 532
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD1_DROME (Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.270e-14 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1 Query: 571 TRLVTQPSCIQG--KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 +R+ QP + +RDYQ+ GLNWL+ + + ILADEMGLGKT+QTI L L + + GP + V P ST+ W E + P + V +LG+ + R I++ Sbjct: 513 SRIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQ 620
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD9_MOUSE (Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 ++R+YQL GLNWL+ + N N ILADEMGLGKT+Q+I+ L Y GI GP +++AP ST+ NW E R + + V + G+ R+ I++ Sbjct: 858 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQ 949
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD9_HUMAN (Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 ++R+YQL GLNWL+ + N N ILADEMGLGKT+Q+I+ L Y GI GP +++AP ST+ NW E R + + V + G+ R+ I++ Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDI-NVVVYHGSLISRQMIQQ 950
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13 Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 1 Query: 589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLG---YLH----------EFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 P I+ +R YQ G+NWL L + ++GIL D+MGLGKTLQTI ++ YL E R + P +++ P S G+W NE ++ P L+ V + G P R +R L Sbjct: 1265 PIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRAL--PSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQL 1377
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: MIT1_SCHPO (Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe GN=mit1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13 Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 Query: 565 SNTRLVTQPSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900 +N +QPS I+G + YQL GLNWL + ILADEMGLGKT+Q IS + L +R P +V+ P +T+ NW E++++ P L+ +G+ + R +R+ L+ Sbjct: 540 TNLEWHSQPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLF-YRHKCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLI 651
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: CHD8_DANRE (Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8 PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13 Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 1 Query: 607 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 ++R+YQL G+NWL+ + N N ILADEMGLGKT+Q+I+LL + G+ P M++AP ST+ NW E + + A+ + G+ R+ I++ Sbjct: 846 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEMFS-AGVQSPFMIIAPLSTITNWEREFSNWTD-MNAIVYHGSLASRQMIQQ 937 The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bpback to top |