FC917857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW2_ARATH (Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=2) HSP 1 Score: 311.612 bits (797), Expect = 3.914e-84 Identity = 160/213 (75.12%), Postives = 170/213 (79.81%), Query Frame = 1 Query: 274 ADISKRXXXXXXXXXXXXXXXXXXXXXXXNAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLS---NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLVA 903 A+ISKR NA+IDADMNN+GKGRLKYLLQQTELF+HFAK D S+SQKKAKGRGRHASK+T DGL+ NTRL+TQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL YLHE+RGI GPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE+LLVA Sbjct: 74 AEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQKKAKGRGRHASKITEEEEDEEYLKEEEDGLTGSGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVA 286
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW2_ORYSJ (Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2) HSP 1 Score: 292.352 bits (747), Expect = 2.458e-78 Identity = 144/182 (79.12%), Postives = 159/182 (87.36%), Query Frame = 1 Query: 361 NAAIDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGRHASKLTXXXXXXXXXXXXXDGLSN---TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLL 897 NAA+DADMNN+GKGRLKYLLQQTE+F+HFAKG+QS +KK +GRGRHASK+T D L+ TRL++QPSCI+GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNW+ EI+RFCP+LRAVKFLGNPEER HIRENLL Sbjct: 146 NAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQS-KEKKPRGRGRHASKMTEEEEDEEYLKEEEDALAGSGGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLL 326
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISWI_DROME (Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.360e-35 Identity = 85/191 (44.50%), Postives = 113/191 (59.16%), Query Frame = 1 Query: 370 IDADMNNRGKGRLKYLLQQTELFSHFAKGDQSASQKKAKGRGR-------------HASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900 I+AD + R +LL+QTE+F+HF + + S K KGR + H + T R P+ I+ G+MRDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLLGYL F+ GPH+V+ PKSTL NW+NE +++CP LRAV +G+ + R ++L+ Sbjct: 39 IEADRSRR----FDFLLKQTEIFTHFMT-NSAKSPTKPKGRPKKIKDKDKEKDVADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLM 224
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA5_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.389e-35 Identity = 88/186 (47.31%), Postives = 113/186 (60.75%), Query Frame = 1 Query: 403 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897 R +YLL+QTELF+HF A+ ++ K GR G + + T + TR PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+ +R I GPHMV+ PKSTL NWM+E +R+ P LR+V +G+ E+R +R+ LL Sbjct: 91 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLL 276
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA5_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 9.777e-35 Identity = 87/186 (46.77%), Postives = 113/186 (60.75%), Query Frame = 1 Query: 403 RLKYLLQQTELFSHF----AKGDQSASQKKAKGR--------------GRHASKLTXXXXXXXXXXXXXDGLSN-TRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897 R +YLL+QTELF+HF A+ ++ K GR G + + T + TR PS ++ GK+RDYQ+ GLNWLI LYENGINGILADEMGLGKTLQTISLLGY+ +R I GPHMV+ PKSTL NWM+E +++ P LR+V +G+ E+R +R+ LL Sbjct: 90 RFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLL 275
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA1_MOUSE (Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.844e-33 Identity = 84/186 (45.16%), Postives = 111/186 (59.68%), Query Frame = 1 Query: 403 RLKYLLQQTELFSHFAKGDQSAS------QKKAKGRGRHASKLTXXXXXXXXXXXXXDG-----LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897 R ++LL+QTELF+HF + S K A+ R + K + LS +R + PS ++G +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R IR+ ++ Sbjct: 98 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPRVKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMM 283
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMCA1_HUMAN (Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 3.145e-33 Identity = 85/186 (45.70%), Postives = 113/186 (60.75%), Query Frame = 1 Query: 403 RLKYLLQQTELFSHF----AKGDQSASQKKAKGRGR-----HASKLTXXXXXXXXXXXXXDG--LSNTRLVTQ--------PSCIQG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER-RHIRENLL 897 R ++LL+QTELF+HF A+ ++ GR R S ++ D LS +R + PS ++G +RDYQ+ GLNWLI LYENG+NGILADEMGLGKTLQTI+LLGYL +R I GPHMV+ PKSTL NWMNE +R+ P LR + F+G+ + R IR+ ++ Sbjct: 94 RFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMM 279
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_CRYNE (Putative DNA helicase INO80 OS=Cryptococcus neoformans GN=INO80 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.979e-28 Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 568 NTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 N+ +TQP + ++++YQL GL WL LYE GINGILADEMGLGKT+Q+ISLL YL E + GP +V+AP STL NW E+ RF P L+A+ + G+P++R +R+ Sbjct: 857 NSVTITQPKMLMAQLKEYQLKGLTWLGNLYEQGINGILADEMGLGKTIQSISLLAYLAEHHNLWGPFLVIAPASTLHNWQQELARFVPRLKALPYWGSPKDRETLRK 963
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: ISW1_CAEEL (Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis elegans GN=isw-1 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 6.786e-28 Identity = 74/184 (40.22%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 403 RLKYLLQQTELFSH-FAKGDQSAS-----QKKAKGR--------GRHASKLTXXXXXXXXXXXXXDGLSNTRLVT---QPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900 R + LLQ+TE FSH + GD + K +GR G H + T D + + LV P I+ G+MRDYQ+ GLNWL L N INGILADEMGLGKTLQTIS++GY+ ++ PH+V+ PKSTL NW NE +++CP + AV +G+ R + ++++ Sbjct: 48 RFERLLQKTENFSHCLSSGDAKLATGAPVDTKKRGRPSKKNGIDGDHRHRKTEQEEDEEMVA---DAIKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVIL 228
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_EMENI (Putative DNA helicase ino80 OS=Emericella nidulans GN=ino80 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.786e-28 Identity = 54/103 (52.43%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 ++QP+ + K+++YQL GLNWL+ LYE GINGILADEMGLGKT+Q+IS++ YL E I GP +V+AP STL NW EI +F P ++ + + GN ++R+ +R+ Sbjct: 788 ISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEVHNIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRK 890 The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bpback to top |