FC917857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 565 SNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 S R V P ++G +R YQ GLNWL LY NG NGILADEMGLGKT+QTISLL YL I GPH++V P S + NW E ++F P + + + G+P++R R+ Sbjct: 766 SKVRDVPLPPLLRGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 873
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL + GPH++V P S L NW E +RF P + + + GNP++R+ R+ Sbjct: 618 VPTPSLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGNPQQRKEKRK 720
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.043e-24 Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1 Query: 571 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 TRL QP ++G++R YQ G WL LY NG+NGILADEMGLGKT+QTISLL +L +G+ GPH+VVAP S + NW E ++F P + + + GN +ER+ R Sbjct: 978 TRL-RQPFLLRGQLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKR 1081
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24 Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 P ++G +R+YQ GL+WL LY N INGILADEMGLGKT+QTI+LL +L G+ GPH+VV P S + NW E +++CP + + + GN EERR R Sbjct: 776 PHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKR 874
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4) HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24 Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 562 LSNTRLVTQ-PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 L T++ T P I+G++R+YQ+ GL+W++ LYE +NGILADEMGLGKT+QTISLL ++ I GPH++V P S + NW E +++CP L+ + + G +ER R+ Sbjct: 541 LETTQVKTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRK 650
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24 Identity = 49/103 (47.57%), Postives = 73/103 (70.87%), Query Frame = 1 Query: 568 NTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER 873 N +V QPS +Q G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q ++L+ YL EF+G GPH+++ P + L NW +E+ + P + + ++G ++R Sbjct: 966 NEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQR 1068
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.765e-24 Identity = 50/107 (46.73%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 580 VTQPSCIQGKM--RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 + QPS + + + YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L YL++ G GPH++V P ST+ NW+ E+ +CP L+ + + G+ EER+ IR N+ Sbjct: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNI 590
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.014e-23 Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL + GPH++V P S L NW E +RF P + + + G+P++R+ R+ Sbjct: 686 VPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRK 788
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.014e-23 Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL + GPH++V P S L NW E +RF P + + + G+P++RR R+ Sbjct: 755 VPVPSLLRGTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRK 857
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23 Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 1 Query: 586 QPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 QP +G ++ YQ+ G+ WL +Y+ GI+GILADEMGLGKT+Q+I+ L ++ E G+ GP +V++P STL NW E+ RF P + V + G+P ER+ +R+ Sbjct: 527 QPKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQ 627 The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bpback to top |