FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_DEBHA (Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  565 SNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            S  R V  P  ++G +R YQ  GLNWL  LY NG NGILADEMGLGKT+QTISLL YL     I GPH++V P S + NW  E ++F P  + + + G+P++R   R+
Sbjct:  766 SKVRDVPLPPLLRGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIVVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 873          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_CANGA (Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + + + GNP++R+  R+
Sbjct:  618 VPTPSLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGNPQQRKEKRK 720          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.043e-24
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  571 TRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            TRL  QP  ++G++R YQ  G  WL  LY NG+NGILADEMGLGKT+QTISLL +L   +G+ GPH+VVAP S + NW  E ++F P  + + + GN +ER+  R
Sbjct:  978 TRL-RQPFLLRGQLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLAHLACDKGVWGPHLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKR 1081          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 1
Query:  589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            P  ++G +R+YQ  GL+WL  LY N INGILADEMGLGKT+QTI+LL +L    G+ GPH+VV P S + NW  E +++CP  + + + GN EERR  R
Sbjct:  776 PHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKR 874          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SSL1_CAEEL (Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  562 LSNTRLVTQ-PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            L  T++ T  P  I+G++R+YQ+ GL+W++ LYE  +NGILADEMGLGKT+QTISLL ++     I GPH++V P S + NW  E +++CP L+ + + G  +ER   R+
Sbjct:  541 LETTQVKTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRK 650          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.552e-24
Identity = 49/103 (47.57%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  568 NTRLVTQPSCIQ-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEER 873
            N  +V QPS +Q G +RDYQL GL W++ LY N +NGILADEMGLGKT+Q ++L+ YL EF+G  GPH+++ P + L NW +E+  + P +  + ++G  ++R
Sbjct:  966 NEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQR 1068          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMRCD_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.765e-24
Identity = 50/107 (46.73%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  580 VTQPSCIQGKM--RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            + QPS +   +  + YQ  GLNWL  ++++G+NGILADEMGLGKT+Q I+ L YL++  G  GPH++V P ST+ NW+ E+  +CP L+ + + G+ EER+ IR N+
Sbjct:  485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ-EGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNI 590          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_YEAST (Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.014e-23
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + + + G+P++R+  R+
Sbjct:  686 VPVPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRK 788          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_KLULA (Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.014e-23
Identity = 54/103 (52.43%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL   +   GPH++V P S L NW  E +RF P  + + + G+P++RR  R+
Sbjct:  755 VPVPSLLRGTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRK 857          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: INO80_DROME (Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.259e-23
Identity = 47/101 (46.53%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  586 QPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            QP   +G ++ YQ+ G+ WL  +Y+ GI+GILADEMGLGKT+Q+I+ L ++ E  G+ GP +V++P STL NW  E+ RF P  + V + G+P ER+ +R+
Sbjct:  527 QPKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYGVWGPFLVISPASTLHNWQQEMSRFVPDFKVVPYWGSPAERKILRQ 627          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
SWR1_DEBHA1.565e-2450.00Helicase SWR1 OS=Debaryomyces hansenii GN=SWR1 PE=... [more]
SWR1_CANGA1.565e-2452.43Helicase SWR1 OS=Candida glabrata GN=SWR1 PE=3 SV=... [more]
SWR1_USTMA2.043e-2452.38Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
SWR1_EMENI4.552e-2452.53Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
SSL1_CAEEL4.552e-2446.36Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 ... [more]
BRM_ARATH4.552e-2447.57ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
SMRCD_HUMAN7.765e-2446.73SWI/SNF-related matrix-associated actin-dependent ... [more]
SWR1_YEAST1.014e-2351.46Helicase SWR1 OS=Saccharomyces cerevisiae GN=SWR1 ... [more]
SWR1_KLULA1.014e-2352.43Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3... [more]
INO80_DROME2.259e-2346.53Putative DNA helicase Ino80 OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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