FC917857

Overview
NameFC917857
Unique NameFC917857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23
Identity = 48/108 (44.44%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  574 RLVTQPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            ++V Q S  + G +++YQ+ GL WL+ LY N +NGILADEMGLGKT+QTISL+ YL + + + GP++++ P STL NW+ E  ++ P +  V + G+P+ RR ++  +
Sbjct:  760 KVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQM 867          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.854e-23
Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            V QP  ++G +R YQ AGL WL  L+ N +NGILADEMGLGKT+QTI+LLG+L   +G+ G H+++ P S + NW  E ++F P ++ + + GN +ER+  R
Sbjct:  383 VRQPFLLRGTLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLGHLACDKGVWGQHLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKR 484          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            V  P  ++G +R YQ  GL WL  LY N  NGILADEMGLGKT+QTISLL YL     I GPH+++ P S + NW  E +RF P  + + + GNP +RR  R
Sbjct:  899 VEPPFLLRGTLRAYQQLGLEWLAGLYNNDTNGILADEMGLGKTIQTISLLSYLACEHHIWGPHLIIVPTSVMLNWEMEFKRFAPGFKVMTYYGNPVQRREKR 1000          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885
            V  P  ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTI+LL YL   +   GPH+++ P S L NW  E +RF P  + + + G+P++R+  R
Sbjct:  661 VPVPPLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTIALLAYLACEKENWGPHLIIVPTSVLLNWEMEFKRFAPGFKVLSYYGSPQQRKEKR 762          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23
Identity = 50/110 (45.45%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  562 LSNTRLVTQ-PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            L+ T++ T  P  ++G++R+YQ  GL+WL+ +YE  +NGILADEMGLGKT+QTISLL +L   +G  GPH+++ P S + NW  E++R+CP  + + + G  +ER+  R+
Sbjct:  601 LATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQ 710          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  556 DGLSNTRLVTQPSCIQGK-MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLG 858
            +G  +   + QP  ++   ++ YQL GLNWLI LYENG+NGILADEMGLGKT+Q+I+LL +++E     GP +V AP STL NWMNE  +F P L  +K+ G
Sbjct:  203 NGAPDDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEM-DTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYG 303          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  565 SNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            S  + V  PS ++G +R YQ  GLNWL  LY N  NGILADEMGLGKT+QTISLL YL       GPH+++ P S + NW  E ++F P  + + + G+P++R   R+
Sbjct:  808 SKVKDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGPHLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 915          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  403 RLKYLLQQTELFSHFAKGDQSASQKKAKG-RGRHASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900
            R+  LL+QT  F         A Q +AK   G     +T               +   ++  QPS  + G +++YQL GL W++ LY N +NGILADEMGLGKT+Q+ISL+ YL+E +   GP +V+ P ST+ NW  E  ++ P L  + + G P +R  ++  + V
Sbjct:  400 RITQLLRQTNSFLDSLSEAVRAQQNEAKILHGEEVQPITDEEREKTDYYEVAHRIKE-KIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRV 566          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 1
Query:  586 QPSCIQGKM--RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894
            QPS +   +  + YQ  GLNWL  ++++G+NGILADEMGLGKT+Q I+ L YL +  G  GPH++V P ST+ NW+ E+  +CP L  + + G+ EER+ IR N+
Sbjct:  482 QPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ-EGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNI 585          
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888
            P  ++G +R+YQ  GL+WL  LY N INGILADEMGLGKT+QTI+LL +L     + GPH+VV P S + NW  E +++CP  + + + G+ EERR  R+
Sbjct:  823 PHLLRGTLREYQHYGLDWLAGLYNNHINGILADEMGLGKTIQTIALLAHLAVEHEVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGSIEERRQKRK 922          
The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
BRM_DROME2.951e-2344.44ATP-dependent helicase brm OS=Drosophila melanogas... [more]
SWR1_CRYNE3.854e-2348.04Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]
SWR1_YARLI8.585e-2350.98Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
SWR1_ASHGO8.585e-2349.02Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1[more]
SRCAP_HUMAN8.585e-2345.45Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
YFK8_YEAST1.121e-2251.96Uncharacterized ATP-dependent helicase YFR038W OS=... [more]
SWR1_CANAL1.121e-2247.22Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=... [more]
STH1_YEAST1.121e-2235.71Nuclear protein STH1/NPS1 OS=Saccharomyces cerevis... [more]
SMRCD_MOUSE1.121e-2247.62SWI/SNF-related matrix-associated actin-dependent ... [more]
SWR1_ASPFU1.912e-2250.00Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bp
AAGAAACCCTCGTTTTGAGGAAAATATTCAAAGAGCGCAATGGCGAAACC
CTCTAAGGCGCGGGAATCGTCCGATGATGCCTTGTCCAACGGCTCCAGTT
CGTCGGAGGAAGAGCAAATCAACGATCAGATCAACGAAGACGACGAGGAG
GAGCTCGAAGCCGTGGCTCGCTCTGCTGATGCTGACTCTGACGACGATAA
CTCTCCGGCGTCCGAAGACGAGGCCGCTGCCGACGGAGACGACGTTGAAG
AGGATGACGACAGTGGGGCTAATGCAGATATTAGCAAGCGTGAAAAGCAG
AGACTAAAAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAACTATT
GGATAAACAAAATGCTGCTATTGATGCTGATATGAACAATAGGGGGAAGG
GCCGATTGAAGTATCTATTGCAGCAAACAGAGTTGTTTTCTCATTTTGCG
AAAGGCGATCAATCTGCATCTCAGAAGAAGGCAAAAGGAAGGGGACGCCA
TGCATCTAAACTCACTGAAGAGGAAGAAGATGAAGAATACCTCAAGGAAG
AAGAAGATGGTTTGTCAAACACGCGGCTGGTAACACAACCGTCTTGTATT
CAGGGAAAAATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATACG
GTTATATGAGAATGGGATAAATGGAATTCTTGCTGATGAAATGGGTCTTG
GTAAAACCTTGCAAACCATATCCTTGTTGGGCTACCTTCATGAGTTCAGA
GGAATTACTGGCCCTCATATGGTGGTTGCTCCAAAATCTACCCTTGGTAA
CTGGATGAACGAAATTCGTCGTTTCTGCCCAGTTTTACGTGCTGTGAAGT
TTCTTGGAAATCCTGAAGAAAGGAGACATATACGTGAAAATTTACTGGTT
GCTG
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