FC917857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: BRM_DROME (ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.951e-23 Identity = 48/108 (44.44%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 574 RLVTQPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 ++V Q S + G +++YQ+ GL WL+ LY N +NGILADEMGLGKT+QTISL+ YL + + + GP++++ P STL NW+ E ++ P + V + G+P+ RR ++ + Sbjct: 760 KVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQM 867
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.854e-23 Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 V QP ++G +R YQ AGL WL L+ N +NGILADEMGLGKT+QTI+LLG+L +G+ G H+++ P S + NW E ++F P ++ + + GN +ER+ R Sbjct: 383 VRQPFLLRGTLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLGHLACDKGVWGQHLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKR 484
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23 Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 V P ++G +R YQ GL WL LY N NGILADEMGLGKT+QTISLL YL I GPH+++ P S + NW E +RF P + + + GNP +RR R Sbjct: 899 VEPPFLLRGTLRAYQQLGLEWLAGLYNNDTNGILADEMGLGKTIQTISLLSYLACEHHIWGPHLIIVPTSVMLNWEMEFKRFAPGFKVMTYYGNPVQRREKR 1000
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_ASHGO (Helicase SWR1 OS=Ashbya gossypii GN=SWR1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23 Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 580 VTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIR 885 V P ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTI+LL YL + GPH+++ P S L NW E +RF P + + + G+P++R+ R Sbjct: 661 VPVPPLLRGTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTIALLAYLACEKENWGPHLIIVPTSVLLNWEMEFKRFAPGFKVLSYYGSPQQRKEKR 762
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23 Identity = 50/110 (45.45%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 562 LSNTRLVTQ-PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 L+ T++ T P ++G++R+YQ GL+WL+ +YE +NGILADEMGLGKT+QTISLL +L +G GPH+++ P S + NW E++R+CP + + + G +ER+ R+ Sbjct: 601 LATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQ 710
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: YFK8_YEAST (Uncharacterized ATP-dependent helicase YFR038W OS=Saccharomyces cerevisiae GN=YFR038W PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22 Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 Query: 556 DGLSNTRLVTQPSCIQGK-MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLG 858 +G + + QP ++ ++ YQL GLNWLI LYENG+NGILADEMGLGKT+Q+I+LL +++E GP +V AP STL NWMNE +F P L +K+ G Sbjct: 203 NGAPDDAAIKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEM-DTKGPFLVTAPLSTLDNWMNEFAKFAPDLPVLKYYG 303
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_CANAL (Helicase SWR1 OS=Candida albicans GN=SWR1 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22 Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 565 SNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 S + V PS ++G +R YQ GLNWL LY N NGILADEMGLGKT+QTISLL YL GPH+++ P S + NW E ++F P + + + G+P++R R+ Sbjct: 808 SKVKDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGPHLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 915
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: STH1_YEAST (Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae GN=STH1 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22 Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 403 RLKYLLQQTELFSHFAKGDQSASQKKAKG-RGRHASKLTXXXXXXXXXXXXXDGLSNTRLVTQPSC-IQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENLLV 900 R+ LL+QT F A Q +AK G +T + ++ QPS + G +++YQL GL W++ LY N +NGILADEMGLGKT+Q+ISL+ YL+E + GP +V+ P ST+ NW E ++ P L + + G P +R ++ + V Sbjct: 400 RITQLLRQTNSFLDSLSEAVRAQQNEAKILHGEEVQPITDEEREKTDYYEVAHRIKE-KIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRV 566
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SMRCD_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 1.121e-22 Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 586 QPSCIQGKM--RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRENL 894 QPS + + + YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L YL + G GPH++V P ST+ NW+ E+ +CP L + + G+ EER+ IR N+ Sbjct: 482 QPSLLNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQ-EGNKGPHLIVVPASTIDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNI 585
BLAST of FC917857 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22 Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1 Query: 589 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIRE 888 P ++G +R+YQ GL+WL LY N INGILADEMGLGKT+QTI+LL +L + GPH+VV P S + NW E +++CP + + + G+ EERR R+ Sbjct: 823 PHLLRGTLREYQHYGLDWLAGLYNNHINGILADEMGLGKTIQTIALLAHLAVEHEVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGSIEERRQKRK 922 The following BLAST results are available for this feature:
BLAST of FC917857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917857 ID=FC917857; Name=FC917857; organism=Citrus clementina; type=EST; length=904bpback to top |