FC919323

Overview
NameFC919323
Unique NameFC919323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10534 contig Ccv1_Contig10534:325..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.927e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = -3 
Query:   12 PTVQIAGNFSPV-PEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHTGI 326
            P   ++GNF+P+  E P  ++LP  G +P+C+ G +VR G NP  + VAG+H+FDGDGM+H V+   G  +Y  R+ +T+R  QE   G   F K IG+L G  G+
Sbjct:   44 PLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMK-IGDLKGFFGL 148
[Close]
BLAST of FC919323 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.772e-14
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = -3 
Query:   18 PLPKTADPTVQIAGNFSPVPEKPVCQNLPTT------GKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFAQERSLGRPVFPKAIGELHGHT 347
            P   + DP   ++ NF+PV ++     LP T      G +P  + G Y+RNG NP   P   +H FDGDGM+HA+K + G  +   R+ +T ++  E+  G PV P      +G T
Sbjct:  100 PSRPSVDPKHVLSDNFAPVLDE-----LPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVT 210
The following BLAST results are available for this feature:
BLAST of FC919323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD1_ARATH4.927e-1942.45Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH4.772e-1434.48Probable carotenoid cleavage dioxygenase 4, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC06055C04T7 PCR Citrus clementina cDNA clone C06055C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919323 ID=FC919323; Name=FC919323; organism=Citrus clementina; type=EST; length=538bp
GATTATCTTGCGATGCCCGTGTGGCCGTGAAGCTCGCCAATGGCTTTGGG
GAATACGGGGCGGCCTAAGCTACGTTCTTGAGCAAAACGGTTTGTTTCAG
TGAAACGACAAGAATAGCTGACAGAGCCTTTGTTGAATTTGACTGCATGA
ACCATGCCGTCTCCGTCGAAGAAATGGTGGCCGGCGACCGGTTCGTGAAG
TGGGTTGGCTCCGTTTCTGACGTAGACGCCTTGAATGCAGTCGGGGACCT
TTCCGGTAGTGGGAAGGTTCTGGCAGACGGGTTTTTCGGGCACCGGAGAG
AAGTTTCCGGCGATTTGGACGGTGGGGTCGGCTGTTTTGGGGAGAGGATG
CTGACGCTCTTGAGAAACCAATGCGTTTTCGACTGCGTCCAAGGCTAAAG
CTGCTGCTTTTTGTAAGAAGTTCCATTTTGAAGGGGCGAAATTGTCATTT
TCCTTGGGTTGCTGCTTANTTGTAAGAGGAGGAGAAGATGGAGGAGGGGT
ANCTGCAGGTGATGGAGGGTATTTTGGGGACTGCTTGG
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