FC919329

Overview
NameFC919329
Unique NameFC919329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 85/203 (41.87%), Postives = 118/203 (58.13%), Query Frame = -1
Query:    6 KDEINDLVNKGL----IVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIE 602
            + EIN +V K L    IV S+SP S     V K      GT RL ++Y+ LNK+     +P+P  ++LL ++ +A IF+  D+ SG+ QI + PKDRYKTAF  P G+YE+TVMPFGL NAPS F R M D +     F  VY+DD+LIFS+S ++H+KHL T     +   L +   K      +  FLG+ I    I P++
Sbjct:  635 EQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD----GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQ 832          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 85/203 (41.87%), Postives = 118/203 (58.13%), Query Frame = -1
Query:    6 KDEINDLVNKGL----IVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIE 602
            + EIN +V K L    IV S+SP S     V K      GT RL ++Y+ LNK+     +P+P  ++LL ++ +A IF+  D+ SG+ QI + PKDRYKTAF  P G+YE+TVMPFGL NAPS F R M D +     F  VY+DD+LIFS+S ++H+KHL T     +   L +   K      +  FLG+ I    I P++
Sbjct:  609 EQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD----GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLR-FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQ 806          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.115e-35
Identity = 77/203 (37.93%), Postives = 120/203 (59.11%), Query Frame = -1
Query:   12 EKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIE-RGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNP-YSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 614
            E+  + +I D++N+G+I  S SP++   + V K  +   +   R+VI+Y+ LN+     R+PIPN +++L KL     F+  D+  GF QI++ P+   KTAF+   G YE+  MPFGLKNAP+ FQR MNDI  P  +  C+VY+DD+++FS S+D+H + L   +    KA L +   K    + +  FLGH ++   I P
Sbjct:  220 EQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKP 422          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 76/199 (38.19%), Postives = 120/199 (60.30%), Query Frame = -1
Query:    6 DEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIV-YIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIE 599
            DEIN  +  G+I +S++  +C   +V K    + GT R+V++YKPLNK +K   YP+P    LL K+  + IF+K D+KS +  I++   D +K AF  P G +E+ VMP+G+  AP+ FQ  +N I     +  +V Y+DD+LI SKS  +H KH+K      + A L I+ +K    Q++++F+G+HIS+   TP +
Sbjct:  430 DEINQGLKSGIIRESKAINACPVMFVPK----KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQ 624          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_CYLCV (Enzymatic polyprotein OS=Cestrum yellow leaf curling virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.484e-34
Identity = 75/187 (40.11%), Postives = 112/187 (59.89%), Query Frame = -1
Query:   42 EINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTV-PFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSI-DQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLG 596
            E  DLV KG+I +S+SP S  AFYV  ++EI+R   R+VINYK LNK+     + +P  + +L K+  +  FS  D KSG+WQ+++HP+ +  TAF+  P   Y+W V+PFGLK AP  +Q  M+       +FC+ YIDD+L+F+ S  ++H   L       ++ GL +S  K  + +  I FLG
Sbjct:  221 ECADLVRKGIIEESKSPHSAPAFYVENHNEIKRKKRRMVINYKALNKATIGNAHKLPRIDSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSCPPQKHYQWNVLPFGLKQAPGIYQNFMDKNLEGLENFCLAYIDDILVFTNSSREEHLSKLLVVLERCKEKGLILSKKKAIIARQTIDFLG 407          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 75/199 (37.69%), Postives = 120/199 (60.30%), Query Frame = -1
Query:    6 DEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIV-YIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIE 599
            DEIN  +  G+I +S++  +C   +V K    + GT R+V++YKPLNK +K   YP+P    LL K+  + IF+K D+KS +  I++   D +K AF  P G +E+ VMP+G+  AP+ FQ  +N I     +  +V Y+D++LI SKS  +H KH+K      + A L I+ +K    Q++++F+G+HIS+   TP +
Sbjct:  430 DEINQGLKSGIIRESKAINACPVMFVPK----KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQ 624          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 75/199 (37.69%), Postives = 120/199 (60.30%), Query Frame = -1
Query:    6 DEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIV-YIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIE 599
            DEIN  +  G+I +S++  +C   +V K    + GT R+V++YKPLNK +K   YP+P    LL K+  + IF+K D+KS +  I++   D +K AF  P G +E+ VMP+G+  AP+ FQ  +N I     +  +V Y+D++LI SKS  +H KH+K      + A L I+ +K    Q++++F+G+HIS+   TP +
Sbjct:  430 DEINQGLKSGIIRESKAINACPVMFVPK----KEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQ 624          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.852e-33
Identity = 76/192 (39.58%), Postives = 115/192 (59.90%), Query Frame = -1
Query:   42 EINDLVNKGLIVKSRSPWSCAAFYVNKNSEIE-------RGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLG 596
            +IN L+   +I  S S     AF V   +EI+       +G  R+V NYK LN++ +  +Y +P  N ++ K+  + I+SKFD+KSGFWQ+ +  +    TAF      YEW VMPFGLKNAP+ FQR M++++     F  VYIDD+L+FS++ +QH +HL T     ++ GL +S +K+ +   +I FLG
Sbjct: 1421 QINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLG 1612          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.258e-32
Identity = 72/203 (35.47%), Postives = 117/203 (57.64%), Query Frame = -1
Query:   12 EKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTP-RLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNP-YSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITP 614
            E   ++++ +++N+GLI +S SP++   + V K  +       R+VI+Y+ LN+     RYPIPN +++L KL     F+  D+  GF QI++  +   KTAF+   G YE+  MPFGL+NAP+ FQR MN+I  P  +  C+VY+DD++IFS S+ +H   ++  +     A L +   K    + +  FLGH ++   I P
Sbjct:  219 EIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKP 421          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 73/202 (36.14%), Postives = 114/202 (56.44%), Query Frame = -1
Query:   27 MDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTP--RLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIY-NPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISK 623
            M +     +E+  L+  G+I  SRSP++   + V+K      G P  RLVI+++ LN+     RYP+P+   +L  L  A  F+  D+KSG+ QI +   DR KT+F+V  G+YE+  +PFGL+NA S FQR ++D+        C VY+DDV+IFS++   H +H+ T       A + +S  K   F+  + +LG  +SK
Sbjct:  191 MGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSK 392          
The following BLAST results are available for this feature:
BLAST of FC919329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
YI31B_YEAST2.412e-3541.87Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST2.412e-3541.87Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL3_DROME4.115e-3537.93Retrovirus-related Pol polyprotein from transposon... [more]
RTF21_SCHPO2.042e-3438.19Retrotransposable element Tf2 155 kDa protein type... [more]
POL_CYLCV3.484e-3440.11Enzymatic polyprotein OS=Cestrum yellow leaf curli... [more]
RTF23_SCHPO1.324e-3337.69Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO1.324e-3337.69Retrotransposable element Tf2 155 kDa protein type... [more]
POL_COYMV3.852e-3339.58Putative polyprotein OS=Commelina yellow mottle vi... [more]
POL2_DROME4.258e-3235.47Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME1.049e-3036.14Retrovirus-related Pol polyprotein from transposon... [more]

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Properties
Property NameValue
Genbank descriptionC16000A02SK PCR Citrus clementina cDNA clone C16000A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919329 ID=FC919329; Name=FC919329; organism=Citrus clementina; type=EST; length=638bp
TATCGCTCAATTGGAGTAATGGTTCCTTTTGAAATATGATGACCTAGGAA
CCGGATTTTTGTTTGAAATAAAGAGACTTTGGAATTTGAAATTGCCAATC
CAGCCTTTCTGGTGGCAAAATAAAAGGTCTTTAAATGTTTAAAATGTTGA
TCAATTGATTTTGAAAAAATCAACACGTCATCAATATAAACGATACAAAA
ATCGGAATAAGGATTGTAAATGTCATTCATAATTCTTTGAAATTCAGATG
GTGCATTTTTCAAACCAAATGGCATAACAGTCCACTCATACTGTCCAAAT
GGAACAGTAAAAGCGGTTTTATAACGGTCTTTTGGATGAATTTGAATTTG
CCAAAATCCTGATTTCATGTCAAATTTTGAAAATATGAAAGCAGAATGCA
ATTTTTGAAGCAAATCATTTTTATTAGGTATTGGGTACCTAATCCATTTT
AAAGATTTATTTAAAGGTTTGTAATTTATAACAAGTCTTGGTGTGCCTCT
CTCAATTTCGGAATTTTTATTAACATAAAAAGCGGCACATGACCAAGGTG
ACCTAGATTTTACAATAAGTCCTTTATTAACAAGATCATTAATTTCATCT
TTACAATGTTTCTCTAAATCCATATTCATTTGAATCGG
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