FC919329

Overview
NameFC919329
Unique NameFC919329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_RTBVP (Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.799e-30
Identity = 74/198 (37.37%), Postives = 113/198 (57.07%), Query Frame = -1
Query:   15 EINDLVNKGLIVKSRSPWS--CAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYK--TAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTIT 596
            +I +L++  LI K+        AAF V  +SE     PR+V NYK LN ++    + IP+K  ++  +  A IFSKFD+K+GF  +++  KD +K  T FT   G Y W V PFG+ NAP  FQR M + +     F ++YIDD+LI S +  +H +HLK F+   ++ G  +S  K  +F  ++ +LG  I +G I+
Sbjct: 1202 QIKELLDNKLIKKADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKL--KDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLK-FALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKIS 1396          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.755e-29
Identity = 73/205 (35.61%), Postives = 119/205 (58.05%), Query Frame = -1
Query:   30 PIQMNMDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTP-RLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPY-SDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHIS 638
            P+ M  ++E+    +I++L+  G+I  S SP++   + V K  +       R+V+++K LN       YPIP+ N  L  L +A  F+  D+ SGF QI +   D  KTAF+   G+YE+  +PFGLKNAP+ FQR+++DI   +    C VYIDD+++FS+  D H+K+L+    +  KA L ++  K     T++ FLG+ ++
Sbjct:  132 PVNMRGEVER----QIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVT 332          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 62/201 (30.85%), Postives = 105/201 (52.24%), Query Frame = -1
Query:    3 EINDLVNKGLIVKSRSPWSCAAFYVNKNSE--IERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYS-DFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGTITPIER 596
            ++  L+   ++  S S ++     V K S    ++   RLVI+Y+ +NK L   ++P+P  +D+L +L  A  FS  D+ SGF QI++    R  T+F+   G Y +T +PFGLK AP+ FQR+M   ++        +Y+DD+++   S     K+L   +   R+  L +   K S F  ++ FLGH  +   I P ++
Sbjct:  333 QVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDK 533          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: RRPO_OENBE (RNA-directed DNA polymerase homolog OS=Oenothera bertiana PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  129 RLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSD-FCIVYIDDVL---IFSKSIDQHFKHLK 488
            R+ I+Y+ L K     +YPIP  +DL  +L  A  F+K D++SG+WQ++I   D  KT     +G +E+ VMPFGL NA + F  +MN++   Y D F +VY+DD++   I+S S+ +H KHL+
Sbjct:    7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLR 130          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 57/188 (30.32%), Postives = 95/188 (50.53%), Query Frame = -1
Query:   30 INDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHIS 593
            INDL+ +G++++  S  +   + V K +    G  R+V++Y+ +NK    I     +   +L  L      +  D+ +GFW   I P+D + TAFT    QY WTV+P G  N+P  F   + D+     +   VY+DDV I   S  +H ++L   +   ++AG  IS  K ++  + + FLG  I+
Sbjct:  179 INDLLKQGVLIQKESTMNTPVYPVPKPN----GRWRMVLDYRAVNKVTPLIAVQNQHSYGILGSLFKGRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPN-VEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQIT 361          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 53/189 (28.04%), Postives = 94/189 (49.74%), Query Frame = -1
Query:   27 INDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISK 593
            INDL+ +G++++  S  +   + V K      G  R+V++Y+ +NK++  I     +   +L  +      +  D+ +GFW   I P+  + TAFT    QY WT +P G  N+P+ F   + D+     +   VY+DD+ I      +H + L+  +     AG  +S  K  + Q ++ FLG +I+K
Sbjct:  182 INDLLKQGVLIQQNSIMNTPVYPVPKPD----GKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTADVVDLLKEVPN-VQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNITK 365          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 51/189 (26.98%), Postives = 94/189 (49.74%), Query Frame = -1
Query:   27 INDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISK 593
            I+DL+ +G++++  S  +   + V K      G  R+V++Y+ +NK++  I     +   +L  ++     +  D+ +GFW   I P+  + TAFT    QY WT +P G  N+P+ F   + D+     +    Y+DD+ I      +H + L+  +     AG  +S  K  + Q ++ FLG +I+K
Sbjct:  182 IDDLLKQGVLIQQNSTMNTPVYPVPKPD----GKWRMVLDYREVNKTIPLIAAQNQHSAGILSSIYRGKYKTTLDLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPN-VQAYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNITK 365          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: YRD6_CAEEL (Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 52/188 (27.66%), Postives = 98/188 (52.13%), Query Frame = -1
Query:   42 EINDLVNKGLIVK-SRSPWSCAAFYVNKNSEIERGTPRLVINYK--PLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLG 596
            E+N L   G+IV  + + W+     + K      G  R+  ++K   LN +LK   +P+P   D+  +L    ++S+ D+K  + Q+++  + +         G +++  M FGLK AP+ FQ+IM+ + +  +    VY DD++I + SI++H K L+  +   ++ G  +S  K +  Q ++ FLG
Sbjct:  459 ELNRLQEMGVIVPITYAKWAAPIVVIKKKGT---GKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTGVA-VYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLG 641          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_GALV (Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 55/223 (24.66%), Postives = 104/223 (46.64%), Query Frame = -1
Query:    3 MNMDLEKHCKDEINDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFI-FSKFDMKSGFWQIQIHPKDRYKTAFTVP------FGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDF-----CIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISKGT--ITPIER 629
            M+ +  +  +  I   ++ G++V  RSPW+     V K    +    R V + + +NK ++ I   +PN  +LL  L  ++  +S  D+K  F+ +++HP  +   AF          GQ  WT +P G KN+P+ F   ++    P+         + Y+DD+L+ + + +   K  +       K G  +S  K  L Q ++ +LG+ + +G   +TP  +
Sbjct:  183 MSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPGTNDY---RPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGKRWLTPARK 402          
BLAST of FC919329 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 50/189 (26.46%), Postives = 91/189 (48.15%), Query Frame = -1
Query:   27 INDLVNKGLIVKSRSPWSCAAFYVNKNSEIERGTPRLVINYKPLNKSLKWIRYPIPNKNDLLQKLHSAFIFSKFDMKSGFWQIQIHPKDRYKTAFTVPFGQYEWTVMPFGLKNAPSEFQRIMNDIYNPYSDFCIVYIDDVLIFSKSIDQHFKHLKTFYFATRKAGLAISNSKVSLFQTKIRFLGHHISK 593
            I+DL+ +G++    S  +   + V K      G  R+V++Y+ +NK++        +   +L  +      +  D+ +GFW   I P+  + TAFT    QY WT +P G  N+P+ F   + D+     +   VY+DD+ +      +H + L+  +    +AG  +S  K  + Q  + FLG +I+K
Sbjct:  182 IDDLLKQGVLTPQNSTMNTPVYPVPKPD----GRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPN-VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITK 365          
The following BLAST results are available for this feature:
BLAST of FC919329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
POL_RTBVP6.799e-3037.37Polyprotein P3 OS=Rice tungro bacilliform virus (i... [more]
POL5_DROME5.755e-2935.61Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME1.518e-2130.85Retrovirus-related Pol polyprotein from transposon... [more]
RRPO_OENBE1.983e-2141.13RNA-directed DNA polymerase homolog OS=Oenothera b... [more]
POL_FFV3.869e-1730.32Pro-Pol polyprotein OS=Feline foamy virus GN=pol P... [more]
POL_SFV3L1.920e-1628.04Pro-Pol polyprotein OS=Simian foamy virus type 3 (... [more]
POL_SFV11.920e-1626.98Pro-Pol polyprotein OS=Simian foamy virus type 1 G... [more]
YRD6_CAEEL2.773e-1527.66Uncharacterized protein K02A2.6 OS=Caenorhabditis ... [more]
POL_GALV6.830e-1424.66Pol polyprotein OS=Gibbon ape leukemia virus GN=po... [more]
POL_FOAMV6.830e-1426.46Pro-Pol polyprotein OS=Human spumaretrovirus GN=po... [more]

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Properties
Property NameValue
Genbank descriptionC16000A02SK PCR Citrus clementina cDNA clone C16000A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919329 ID=FC919329; Name=FC919329; organism=Citrus clementina; type=EST; length=638bp
TATCGCTCAATTGGAGTAATGGTTCCTTTTGAAATATGATGACCTAGGAA
CCGGATTTTTGTTTGAAATAAAGAGACTTTGGAATTTGAAATTGCCAATC
CAGCCTTTCTGGTGGCAAAATAAAAGGTCTTTAAATGTTTAAAATGTTGA
TCAATTGATTTTGAAAAAATCAACACGTCATCAATATAAACGATACAAAA
ATCGGAATAAGGATTGTAAATGTCATTCATAATTCTTTGAAATTCAGATG
GTGCATTTTTCAAACCAAATGGCATAACAGTCCACTCATACTGTCCAAAT
GGAACAGTAAAAGCGGTTTTATAACGGTCTTTTGGATGAATTTGAATTTG
CCAAAATCCTGATTTCATGTCAAATTTTGAAAATATGAAAGCAGAATGCA
ATTTTTGAAGCAAATCATTTTTATTAGGTATTGGGTACCTAATCCATTTT
AAAGATTTATTTAAAGGTTTGTAATTTATAACAAGTCTTGGTGTGCCTCT
CTCAATTTCGGAATTTTTATTAACATAAAAAGCGGCACATGACCAAGGTG
ACCTAGATTTTACAATAAGTCCTTTATTAACAAGATCATTAATTTCATCT
TTACAATGTTTCTCTAAATCCATATTCATTTGAATCGG
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