FC920562

Overview
NameFC920562
Unique NameFC920562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12667 contig Ccv1_Contig12667:280..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICRS (NADH-quinone oxidoreductase subunit F OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoF PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.938e-90
Identity = 156/240 (65.00%), Postives = 187/240 (77.92%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IFTNLHG     LK + KRGDW  TK L+ KG D+IV EVKKSGLRGRGGAGF +G+KWSFMPK  + +  YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKN+CGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFA  G+         C+
Sbjct:    6 DKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGFSTGMKWSFMPKNLE-KSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICCN (NADH-quinone oxidoreductase subunit F OS=Rickettsia conorii GN=nuoF PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.938e-90
Identity = 156/240 (65.00%), Postives = 187/240 (77.92%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IFTNLHG     LK + KRGDW  TK L+ KG D+IV EVKKSGLRGRGGAGF +G+KWSFMPK  + +  YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A   + A+  YIYIRGE+ NE  N++RA  EAY  GL+GKN+CGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRRG  WFA  G+         C+
Sbjct:    6 DKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGFSTGMKWSFMPKNLE-KSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RICAH (NADH-quinone oxidoreductase subunit F OS=Rickettsia akari (strain Hartford) GN=nuoF PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.305e-90
Identity = 158/242 (65.29%), Postives = 191/242 (78.93%), Query Frame = 3
Query:    3 DRIFTNLHG--LHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            D+IFTNLHG  +HD  LK + KRGDW  TK L+ KG D+I+ E+KKSGLRGRGGAGF +G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A   + A+  YIYIRGE+ NE  N++RA  EAY   L+GKNACGSG+D ++++H GAGAYICGEETALLESLEGK+G PRLKPPFPA  GLYGCPTT+ NVE++AV PTILRR   WFAS G+         C+
Sbjct:    6 DKIFTNLHGGQIHD--LKSSKKRGDWDNTKALLDKGRDFIIEEIKKSGLRGRGGAGFSTGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGTKIFCI 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_STRCO (NADH-quinone oxidoreductase subunit F OS=Streptomyces coelicolor GN=nuoF PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.683e-66
Identity = 119/193 (61.66%), Postives = 149/193 (77.20%), Query Frame = 3
Query:  108 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            D ++  VK+SGLRGRGGAGFP+G+KW F+P+  DG+P YLVVNADESEPGTCKD  ++  +PH L+EG +IA   +R+S A+IY+RGE V   + L  A +EAYAAG LG+N  GSG D  + +H GAGAYICGEETALL+SLEG++G+PRL+PPFPA AGLY CPT V NVE++A  P IL +G DWF S G
Sbjct:   54 DDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFRSMG 245          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NQO1_THET8 (NADH-quinone oxidoreductase subunit 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nqo1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.683e-66
Identity = 121/211 (57.35%), Postives = 153/211 (72.51%), Query Frame = 3
Query:   57 MKRGDWHRTKDLVL-KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            ++ G +   K ++  K  D ++ EVK+SGLRGRGGAGFP+GLKWSFMPK  DG+  YL+ NADESEPG+ KDR I+   PH L+EG ++AG  +RA+  YIY+RGEY      LE+A +EA A G LGKN  G+ + FD+H+H GAGAYICGEETAL+ SLEG +  PRLKPPFPA +GL+G PTT+ NVET+A    I+ RG DWFA  G
Sbjct:   33 LRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMG 242          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_MYCTU (NADH-quinone oxidoreductase subunit F OS=Mycobacterium tuberculosis GN=nuoF PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 118/196 (60.20%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  108 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDG---RPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            D +++ VK SGLRGRGGAGF +G KWSF+P+   G   +P YLVVNADESEPGTCKD  +M   PH L+EG +IA   +RA  A++Y+RGE V   + L  A  EAYAAG LG+N  GSG+D ++ +H GAGAYICGEETALL+SLEG++G+PRL+PPFPA AGLYGCPT + NVET+A  P+I+  G DWF S G
Sbjct:   48 DDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_MYCBO (NADH-quinone oxidoreductase subunit F OS=Mycobacterium bovis GN=nuoF PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 118/196 (60.20%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  108 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDG---RPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            D +++ VK SGLRGRGGAGF +G KWSF+P+   G   +P YLVVNADESEPGTCKD  +M   PH L+EG +IA   +RA  A++Y+RGE V   + L  A  EAYAAG LG+N  GSG+D ++ +H GAGAYICGEETALL+SLEG++G+PRL+PPFPA AGLYGCPT + NVET+A  P+I+  G DWF S G
Sbjct:   48 DDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMG 243          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF2_RHIME (NADH-quinone oxidoreductase subunit F 2 OS=Rhizobium meliloti GN=nuoF2 PE=3 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 117/193 (60.62%), Postives = 141/193 (73.06%), Query Frame = 3
Query:  108 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            D IV  VK+S LRGRGGAGFP+G+KWSF+PK + G+P YL  NADE EPGT KDR IM  DPH+L+EG  ++   + A  AY+YIRGEYV   + +E+A  EA+  G LG    GSG++F VHIH GAGAYICGEETA+LESLEGK+ +PRLKPPFPA AGLY  PT + NVET+A  P I+ RG  WF   G
Sbjct:   40 DEIVELVKESNLRGRGGAGFPTGMKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIG 231          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_PSEAE (NADH-quinone oxidoreductase subunit F OS=Pseudomonas aeruginosa GN=nuoF PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.956e-58
Identity = 111/202 (54.95%), Postives = 137/202 (67.82%), Query Frame = 3
Query:   84 KDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            K L     D IV  VK SGL+GRGGAGFP+G+KW  MPK       YL+ NADE EP T KDR +M   PH L+EG LI+   ++A   YI++RGEYV+  +NL RA  EA AAGLLGKN  GSG+DF++ +H GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT V NVET+   P I+  G DW+ +  R
Sbjct:   48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLAR 249          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_ECOLI (NADH-quinone oxidoreductase subunit F OS=Escherichia coli (strain K12) GN=nuoF PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 7.432e-58
Identity = 111/210 (52.86%), Postives = 139/210 (66.19%), Query Frame = 3
Query:   60 KRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            K G     K L     D IVN+VK +GL+GRGGAGF +GLKWS MPK       YL+ NADE EPGT KDR +M   PH L+EG LI+   ++A   YI++RGEY+    NL RA  EA  AGLLGKN  G+G+DF++ +H GAG YICGEETAL+ SLEG++  PR KPPFPA +G +G PT V NVET+   P IL  G +W+ +  +
Sbjct:   32 KNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISK 241          
The following BLAST results are available for this feature:
BLAST of FC920562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NUOF_RICRS1.938e-9065.00NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICCN1.938e-9065.00NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_RICAH3.305e-9065.29NADH-quinone oxidoreductase subunit F OS=Rickettsi... [more]
NUOF_STRCO9.683e-6661.66NADH-quinone oxidoreductase subunit F OS=Streptomy... [more]
NQO1_THET89.683e-6657.35NADH-quinone oxidoreductase subunit 1 OS=Thermus t... [more]
NUOF_MYCTU3.115e-6460.20NADH-quinone oxidoreductase subunit F OS=Mycobacte... [more]
NUOF_MYCBO3.115e-6460.20NADH-quinone oxidoreductase subunit F OS=Mycobacte... [more]
NUOF2_RHIME5.875e-6360.62NADH-quinone oxidoreductase subunit F 2 OS=Rhizobi... [more]
NUOF_PSEAE1.956e-5854.95NADH-quinone oxidoreductase subunit F OS=Pseudomon... [more]
NUOF_ECOLI7.432e-5852.86NADH-quinone oxidoreductase subunit F OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC32010A04EF RVDevelop1 Citrus clementina cDNA clone C32010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920562 ID=FC920562; Name=FC920562; organism=Citrus clementina; type=EST; length=725bp
AAGACAGGATTTTCACCAACTTACATGGACTGCATGACCCTTTTCTCAAA
GGTGCCATGAAACGGGGTGATTGGCACAGAACTAAAGACTTGGTACTCAA
GGGTGCAGATTGGATTGTCAATGAAGTCAAGAAGTCTGGTCTCCGCGGAC
GTGGTGGTGCTGGTTTTCCCTCTGGCCTCAAGTGGTCCTTCATGCCCAAG
GTGTCTGATGGCCGTCCTTCGTATCTTGTTGTCAATGCTGATGAAAGTGA
ACCTGGAACCTGTAAAGACAGGGAAATTATGCGGCATGATCCACATAAGT
TGTTGGAGGGCTGCTTGATTGCTGGCGTAGGAATGAGGGCTTCTGCTGCT
TACATTTACATAAGGGGTGAATATGTAAATGAACGTAAAAACCTTGAAAG
AGCGAGGCAAGAAGCTTATGCTGCTGGATTGTTGGGCAAGAATGCCTGCG
GATCTGGTTATGATTTTGATGTGCATATCCACTATGGTGCTGGTGCTTAT
ATTTGTGGTGAAGAGACAGCTCTTTTGGAAAGCCTTGAAGGTAAACAGGG
GAAACCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGTTTATATGGTT
GTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTCCCACCATT
TTAAGGCGTGGACCGGACTGGTTTGCCAGTTTTGGCAGGAAGACAATTCT
GGTACAAAATTGTTTGTGTGTCGGG
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