FC920562

Overview
NameFC920562
Unique NameFC920562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_SALTY (NADH-quinone oxidoreductase subunit F OS=Salmonella typhimurium GN=nuoF PE=3 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.291e-57
Identity = 109/210 (51.90%), Postives = 140/210 (66.67%), Query Frame = 3
Query:   60 KRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            K G     K L     D IV++VK +GL+GRGGAGF +GLKWS MPK       YL+ NADE EPGT KDR +M   PH L+EG LI+   ++A   YI++RGEY+    +L RA  EA  AGLLGKN  G+G+DF++ +H GAG YICGEETAL+ SLEG++  PR KPPFPA +G++G PT V NVET+   P IL  G +W+ +  +
Sbjct:   32 KNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISK 241          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_BUCBP (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoF PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.922e-54
Identity = 102/194 (52.58%), Postives = 134/194 (69.07%), Query Frame = 3
Query:  114 IVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSD--GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            +++ +K+SGL+GRGGAGF +GLKWS MP ++D  G   YL+ NADE EPGT KDR +M   PH+LLEG LI+   +  + +YI++RGEYVN  + L+++  EA   G LGKN CGS   F++ IH GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT V NVET++  P I   G  W+    +
Sbjct:   51 VIDLIKQSGLKGRGGAGFLTGLKWSLMPPLNDEYGYTRYLLCNADEMEPGTYKDRFLMEKVPHQLLEGILISAFALSVTKSYIFLRGEYVNTERILKQSIIEATNYGYLGKNVCGSNLTFEIFIHTGAGRYICGEETALINSLEGRRANPRFKPPFPAYVGLWGKPTCVNNVETLSNVPAIFLNGVKWYKGLSK 244          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_AQUAE (NADH-quinone oxidoreductase subunit F OS=Aquifex aeolicus GN=nuoF PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.450e-53
Identity = 108/210 (51.43%), Postives = 138/210 (65.71%), Query Frame = 3
Query:   57 MKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            +K G +   +  +    + I++ V KS LRGRGGAGFP+G KW F   V +  P Y + NADESEPGT KDR I+  DPH L+EG +I+   + A+ AYIYIRGEY      L  A +EA   G LGKN  GSG+D ++++  GAGAYICGEETAL+ESLEGK+G PRLKPP+P   GL+G PT V NVET+A  P I+  G + +   G
Sbjct:   35 LKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFA--VQNPGPRYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIG 242          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_BUCAP (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nuoF PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 100/212 (47.17%), Postives = 141/212 (66.51%), Query Frame = 3
Query:   60 KRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKT 695
            K G +   K L     + +V+ +K+SGL+GRGGAGF +GLKWS M K +  +  YL+ NADE EPGT KDR +M + PH+L+EG L++   +  S  YI++RGEY+     L+++ QEA   G +G N   SG++F++ +H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT V NVET++  P+I+  G +W+    + T
Sbjct:   32 KNGYFSLKKALKTMCPEDVVHLIKESGLKGRGGAGFSTGLKWSLMSKDNSSKIRYLLCNADEMEPGTYKDRFLMENIPHQLIEGMLLSAFALNVSRGYIFLRGEYIKAEYILKKSIQEAINFGFIGSNILNSGFNFELFLHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVFGLWGKPTCVNNVETLSNVPSIVLHGVNWYKKLSKST 243          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_BUCAI (NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoF PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.831e-49
Identity = 94/196 (47.96%), Postives = 131/196 (66.84%), Query Frame = 3
Query:  114 IVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSD--GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKT 695
            ++N VK+SGL+GRGGAGF +GLKWS M +         YL+ NADE EPGT KDR ++   PH+L+EG +++   +  S AYI++RGEYV     L+++ QEA   G +G N  GS ++ ++ +H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT V NVET++  P I+  G  W+ +  + +
Sbjct:   50 VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSS 245          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: HOXF_RALEH (NAD-reducing hydrogenase hoxS subunit alpha OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hoxF PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.454e-45
Identity = 94/200 (47.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:   90 LVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACG-SGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 686
            L+LK  + ++  +  S LRGRGGAGF +GLKW    + ++    Y++ NADE EPGT KDR ++   P K+  G +IA   +      +Y+RGEY   +  LER  QE    GLLG+   G +G+DFD+ I  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT+V NVET A    I+  G DWF + G
Sbjct:  201 LLLK-PEQVIETIVDSRLRGRGGAGFSTGLKWRLC-RDAESEQKYVICNADEGEPGTFKDRVLLTRAPKKVFVGMVIAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGLLGRAIGGRAGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTSVNNVETFAAVSRIMEEGADWFRAMG 398          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_SCHPO (NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC18E5.10 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.655e-39
Identity = 91/233 (39.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:    6 RIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSD---GRPS--YLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            R+F NL       +  A+  G++    +++      I+  V++S LRGRG  GFP+G K   + K +    GR     ++VNA E++ G+ KDR ++RH+PHK++EG +IA   + ASA Y++IR +Y  E   +++   +AYA  LLGKN  G+    ++ IH GAG+YI GEE+AL++SL+G+   P +       +GL+G PT V NVETV+  P I+++GP +F S GR
Sbjct:   33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKMLSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASACYLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQSLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGR 265          
The following BLAST results are available for this feature:
BLAST of FC920562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NUOF_SALTY6.291e-5751.90NADH-quinone oxidoreductase subunit F OS=Salmonell... [more]
NUOF_BUCBP2.922e-5452.58NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_AQUAE1.450e-5351.43NADH-quinone oxidoreductase subunit F OS=Aquifex a... [more]
NUOF_BUCAP2.474e-5347.17NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
NUOF_BUCAI2.831e-4947.96NADH-quinone oxidoreductase subunit F OS=Buchnera ... [more]
HOXF_RALEH1.454e-4547.00NAD-reducing hydrogenase hoxS subunit alpha OS=Ral... [more]
NDUV1_SCHPO2.655e-3939.06NADH-ubiquinone oxidoreductase 51 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionC32010A04EF RVDevelop1 Citrus clementina cDNA clone C32010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920562 ID=FC920562; Name=FC920562; organism=Citrus clementina; type=EST; length=725bp
AAGACAGGATTTTCACCAACTTACATGGACTGCATGACCCTTTTCTCAAA
GGTGCCATGAAACGGGGTGATTGGCACAGAACTAAAGACTTGGTACTCAA
GGGTGCAGATTGGATTGTCAATGAAGTCAAGAAGTCTGGTCTCCGCGGAC
GTGGTGGTGCTGGTTTTCCCTCTGGCCTCAAGTGGTCCTTCATGCCCAAG
GTGTCTGATGGCCGTCCTTCGTATCTTGTTGTCAATGCTGATGAAAGTGA
ACCTGGAACCTGTAAAGACAGGGAAATTATGCGGCATGATCCACATAAGT
TGTTGGAGGGCTGCTTGATTGCTGGCGTAGGAATGAGGGCTTCTGCTGCT
TACATTTACATAAGGGGTGAATATGTAAATGAACGTAAAAACCTTGAAAG
AGCGAGGCAAGAAGCTTATGCTGCTGGATTGTTGGGCAAGAATGCCTGCG
GATCTGGTTATGATTTTGATGTGCATATCCACTATGGTGCTGGTGCTTAT
ATTTGTGGTGAAGAGACAGCTCTTTTGGAAAGCCTTGAAGGTAAACAGGG
GAAACCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGTTTATATGGTT
GTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTCCCACCATT
TTAAGGCGTGGACCGGACTGGTTTGCCAGTTTTGGCAGGAAGACAATTCT
GGTACAAAATTGTTTGTGTGTCGGG
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