FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_LODEL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus GN=PRP5 PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28 Identity = 63/162 (38.89%), Postives = 99/162 (61.11%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV 539 PGEGP L++ P+RELA Q + + +F + M DL+ C GG ++ +Q+ +KRGV+++VATPGRL D+LA + R ++ LDEADR+ D+GFE I+++F + +QT+LFSAT P K++ A+ L P+ + VG ++ QE+ Sbjct: 458 PGEGPIGLVLSPTRELALQIEKEILKFSSTM------DLKVCCCYGGSNIENQISELKRGVNVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEI 613
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 7.116e-28 Identity = 70/193 (36.27%), Postives = 108/193 (55.96%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENRLM 635 +GP L++ P+RELA Q + ++F R + ++ GG QL ++RG IVVATPGRL D+L ++++L YL LDEADR++D+GFE IR++ + +RQTL+F+AT P +++ A L PV VN+G AN + Q V+ + K L + L+ P ++IFC + M Sbjct: 251 DGPTVLVLSPTRELATQIQDEAKKFGRSSR------ISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRM 437 HSP 2 Score: 22.7126 bits (47), Expect = 7.116e-28 Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A A+HG K Q ER+ +S Sbjct: 451 ASAIHGDKSQAERDSVLS 468
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.132e-28 Identity = 73/196 (37.24%), Postives = 104/196 (53.06%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENRLM 635 P GP L++ P+RELA Q +F G + C+ GG QL + RGV IVVATPGRL D+L ++++L YL LDEADR++D+GFE IR++ QRQTL+++AT P ++ A LV V VN+G AN + Q +E V K + + L+ P ++IFC + M Sbjct: 214 PQLGPTILVLSPTRELATQIQAEAVKF-------GKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQILRSKEPGSKIIIFCSTKKM 402 HSP 2 Score: 26.5646 bits (57), Expect = 7.132e-28 Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 A A+HG K Q ER+Y +S Sbjct: 416 AAAIHGDKSQGERDYVLS 433
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 7.143e-28 Identity = 70/178 (39.33%), Postives = 100/178 (56.18%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK 593 PG+GP LI+ P+RELA Q + +F R +R GGV Q+ + RGV + +ATPGRL DML K NL YL LDEADR++D+GFE IR++ + RQTL++SAT P +++N A L + VN+G +AN + Q VE V + K ++ ++K Sbjct: 195 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEK 366 HSP 2 Score: 23.0978 bits (48), Expect = 7.143e-28 Identity = 7/17 (41.18%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAI 726 A+++HG K Q ER++ + Sbjct: 401 ALSIHGDKQQNERDWVL 417
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28 Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q ++ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE IR + + RQTL+FSAT P IQ AR L V ++VGR G+ + ++ Q+VEYV+ K LL+ L + LIF E + M + ++ ++ + +R+ RER Sbjct: 272 PTSLILAPTRELVSQIFDESRKF------AYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 484
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28 Identity = 78/219 (35.62%), Postives = 125/219 (57.08%), Query Frame = 3 Query: 75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716 P LI+ P+REL Q ++ +F A +R + GG D+ SQL ++RG ++VATPGRL D++ + +++L + +YL LDEADR++D+GFE IR + + A RQTL+FSAT P IQ AR L + + ++VGR G+ + ++ Q++EYV+ K LL+ L + LIF E + M + ++ + + +R+ RER Sbjct: 287 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 499
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28 Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 GEGP +I+ P+RELA Q + ++F + LR + GG + Q+ +KRG I+V TPGR+ DMLA + N R Y+ LDEADR+ D+GFE + + D+ + RQT++FSAT P ++ R L KP+ V VG DV Q+V +++E K + LLE L Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASHGO (ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii GN=DBP2 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28 Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 500 PG+GP L++ P+RELA Q + +F R +R GGV Q+ ++RGV I++ATPGRL DML K NL YL LDEADR++D+GFE IR++ D + RQTL++SAT P ++Q AR L P+ VN+G Sbjct: 184 PGDGPVVLVLAPTRELAVQIQKECSKFGRSSR------IRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLHDPIQVNIG 323
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 9.207e-28 Identity = 76/191 (39.79%), Postives = 107/191 (56.02%), Query Frame = 3 Query: 72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENR 629 GP LI+ P+RELA Q + +F G + C+ GG QL+ ++RG IVVATPGRL D+L K ++ L LDEADR++D+GFE IR++ + +RQTL+++AT P +++ A LV PV VN+GR AAN + Q VE V Q K L + L Q+ V+IFC + Sbjct: 507 GPTVLILAPTRELATQIQDEALRF-------GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTK 690 HSP 2 Score: 23.0978 bits (48), Expect = 9.207e-28 Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1 Query: 676 AVAVHGGKDQEEREYAIS 729 AV +HG K Q ER++ ++ Sbjct: 706 AVVIHGDKTQGERDWVLN 723
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 9.225e-28 Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 3 Query: 60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587 VPG+GP LI+ P+REL Q + +++F + + + GG + Q+ +KRG IVV TPGR+ D+L + N R +L +DEADR+ D+GFE I + + + RQT+LFSA P +++ AR L KPV + VG N D+ Q VE + + + LLE L Sbjct: 354 VPGDGPIGLIMAPTRELVVQIHSDIKKFAKSL------GINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELL 526 HSP 2 Score: 24.2534 bits (51), Expect = 9.225e-28 Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1 Query: 679 VAVHGGKDQEEREYAIS 729 +++HGGKDQ +RE ++ Sbjct: 560 LSLHGGKDQTDRESTLA 576 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |