FC920897

Overview
NameFC920897
Unique NameFC920897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP5_LODEL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus GN=PRP5 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 63/162 (38.89%), Postives = 99/162 (61.11%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEV 539
            PGEGP  L++ P+RELA Q  + + +F + M      DL+   C GG ++ +Q+  +KRGV+++VATPGRL D+LA     +   R   ++ LDEADR+ D+GFE  I+++F   +  +QT+LFSAT P K++  A+  L  P+ + VG       ++ QE+
Sbjct:  458 PGEGPIGLVLSPTRELALQIEKEILKFSSTM------DLKVCCCYGGSNIENQISELKRGVNVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEI 613          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.116e-28
Identity = 70/193 (36.27%), Postives = 108/193 (55.96%), Query Frame = 3
Query:   69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENRLM 635
            +GP  L++ P+RELA Q  +  ++F    R      + ++   GG     QL  ++RG  IVVATPGRL D+L  ++++L    YL LDEADR++D+GFE  IR++    + +RQTL+F+AT P +++  A   L  PV VN+G      AN  + Q V+ +    K   L + L+   P   ++IFC  + M
Sbjct:  251 DGPTVLVLSPTRELATQIQDEAKKFGRSSR------ISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRM 437          

HSP 2 Score: 22.7126 bits (47), Expect = 7.116e-28
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A A+HG K Q ER+  +S
Sbjct:  451 ASAIHGDKSQAERDSVLS 468          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.132e-28
Identity = 73/196 (37.24%), Postives = 104/196 (53.06%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECLQKTPP--PVLIFCENRLM 635
            P  GP  L++ P+RELA Q      +F       G     +  C+ GG     QL  + RGV IVVATPGRL D+L  ++++L    YL LDEADR++D+GFE  IR++      QRQTL+++AT P  ++  A   LV  V VN+G      AN  + Q +E V    K   + + L+   P   ++IFC  + M
Sbjct:  214 PQLGPTILVLSPTRELATQIQAEAVKF-------GKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQILRSKEPGSKIIIFCSTKKM 402          

HSP 2 Score: 26.5646 bits (57), Expect = 7.132e-28
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            A A+HG K Q ER+Y +S
Sbjct:  416 AAAIHGDKSQGERDYVLS 433          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.143e-28
Identity = 70/178 (39.33%), Postives = 100/178 (56.18%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQK 593
            PG+GP  LI+ P+RELA Q    + +F    R      +R     GGV    Q+  + RGV + +ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++    +  RQTL++SAT P +++N A   L   + VN+G    +AN  + Q VE V +  K   ++  ++K
Sbjct:  195 PGDGPIVLILAPTRELAVQIQAEISKFGKSSR------IRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEK 366          

HSP 2 Score: 23.0978 bits (48), Expect = 7.143e-28
Identity = 7/17 (41.18%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAI 726
            A+++HG K Q ER++ +
Sbjct:  401 ALSIHGDKQQNERDWVL 417          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 80/219 (36.53%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L N +YL LDEADR++D+GFE  IR + +         RQTL+FSAT P  IQ  AR  L   V ++VGR G+ + ++ Q+VEYV+   K   LL+ L      + LIF E + M  + ++    ++  +     +R+ RER
Sbjct:  272 PTSLILAPTRELVSQIFDESRKF------AYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRER 484          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 78/219 (35.62%), Postives = 125/219 (57.08%), Query Frame = 3
Query:   75 PFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPV-LIFCENRLMLTTFTNIYS*KD*GSGRTWRERSGRER 716
            P  LI+ P+REL  Q ++   +F      A    +R  +  GG D+ SQL  ++RG  ++VATPGRL D++ + +++L + +YL LDEADR++D+GFE  IR + +       A RQTL+FSAT P  IQ  AR  L + + ++VGR G+ + ++ Q++EYV+   K   LL+ L      + LIF E + M  + ++    +   +     +R+ RER
Sbjct:  287 PTSLILAPTRELVSQIFDEARKF------AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQRER 499          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 69/177 (38.98%), Postives = 100/177 (56.50%), Query Frame = 3
Query:   66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            GEGP  +I+ P+RELA Q  +  ++F   +       LR +   GG  +  Q+  +KRG  I+V TPGR+ DMLA     + N R   Y+ LDEADR+ D+GFE  +  + D+ +  RQT++FSAT P  ++   R  L KP+ V VG       DV Q+V  +++E K + LLE L
Sbjct:  443 GEGPIAVIMTPTRELALQITKECKKFSKTL------GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DBP2_ASHGO (ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   63 PGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVG 500
            PG+GP  L++ P+RELA Q  +   +F    R      +R     GGV    Q+  ++RGV I++ATPGRL DML   K NL    YL LDEADR++D+GFE  IR++ D  +  RQTL++SAT P ++Q  AR  L  P+ VN+G
Sbjct:  184 PGDGPVVLVLAPTRELAVQIQKECSKFGRSSR------IRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLHDPIQVNIG 323          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.207e-28
Identity = 76/191 (39.79%), Postives = 107/191 (56.02%), Query Frame = 3
Query:   72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCI-GGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAG--AANLDVIQEVEYVKQEAKIVYLLECL--QKTPPPVLIFCENR 629
            GP  LI+ P+RELA Q  +   +F       G     +  C+ GG     QL+ ++RG  IVVATPGRL D+L  K ++      L LDEADR++D+GFE  IR++ +    +RQTL+++AT P +++  A   LV PV VN+GR    AAN  + Q VE V Q  K   L + L  Q+    V+IFC  +
Sbjct:  507 GPTVLILAPTRELATQIQDEALRF-------GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTK 690          

HSP 2 Score: 23.0978 bits (48), Expect = 9.207e-28
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  676 AVAVHGGKDQEEREYAIS 729
            AV +HG K Q ER++ ++
Sbjct:  706 AVVIHGDKTQGERDWVLN 723          
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.225e-28
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 587
            VPG+GP  LI+ P+REL  Q +  +++F   +       +  +   GG  +  Q+  +KRG  IVV TPGR+ D+L      + N R   +L +DEADR+ D+GFE  I  +  + +  RQT+LFSA  P +++  AR  L KPV + VG     N D+ Q VE   +  + + LLE L
Sbjct:  354 VPGDGPIGLIMAPTRELVVQIHSDIKKFAKSL------GINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELL 526          

HSP 2 Score: 24.2534 bits (51), Expect = 9.225e-28
Identity = 8/17 (47.06%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  679 VAVHGGKDQEEREYAIS 729
            +++HGGKDQ +RE  ++
Sbjct:  560 LSLHGGKDQTDRESTLA 576          
The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP5_LODEL6.281e-2838.89Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
RH14_ORYSJ7.116e-2836.27DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
DB10_NICSY7.132e-2837.24ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
DBP2_MAGGR7.143e-2839.33ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
DED1_SCLS18.203e-2836.53ATP-dependent RNA helicase ded1 OS=Sclerotinia scl... [more]
DED1_PHANO8.203e-2835.62ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DDX46_PONAB8.203e-2838.98Probable ATP-dependent RNA helicase DDX46 OS=Pongo... [more]
DBP2_ASHGO8.203e-2844.52ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii... [more]
RH40_ARATH9.207e-2839.79DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
RH45_ORYSJ9.225e-2836.87DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC32014E04EF RVDevelop1 Citrus clementina cDNA clone C32014E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bp
TGGTGTTTGTATTTCCAATGATCATGATAGCGATGCATGAGGAGATGATG
ATGCCTATTGTTCCTGGAGAGGGTCCATTTTGTTTAATTGTATGTCCATC
CAGAGAGCTTGCGAGGCAGACGTATGAGGTTGTAGAGCAGTTTTTGACGC
CAATGAGGGATGCAGGGTACCCAGACTTAAGGACGTTGCTTTGTATTGGT
GGAGTGGATATGCGGTCTCAGTTGGAGGTTGTAAAGAGGGGTGTACACAT
CGTTGTTGCAACTCCTGGGAGGTTGAAGGACATGCTGGCAAAGAAAAAAA
TGAACCTGGATAATTGCAGATATTTAACTTTGGATGAGGCAGATAGATTG
GTGGATTTGGGATTTGAAGACGATATACGGGAAGTATTTGATCACTTCAA
AGCTCAACGACAGACTCTTTTGTTCTCTGCTACCATGCCAACAAAAATCC
AGAACTTTGCTAGAAGTGCTTTGGTAAAGCCTGTTACTGTTAATGTGGGA
AGAGCTGGAGCAGCAAATCTAGATGTGATTCAGGAAGTGGAGTATGTGAA
GCAAGAGGCAAAGATAGTGTATCTACTTGAATGCCTACAAAAGACACCAC
CTCCCGTTTTGATATTTTGTGAGAACAGGCTGATGTTGACGACATTCACG
AATATCTACTCTTGAAAGGATTGAGGCAGTGGCCGTACATGGAGGGAAAG
ATCAGGAAGAGAGAGAATATGCCATTTCATCCTT
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