FC920897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 2.512e-100 Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 GEGP LIVCPSRELARQTYEVVEQF+ P+ +AGYP LR+LLCIGG+DMRSQLEVVKRGVHIVVATPGRLKDMLAKKKM+LD CRYLTLDEADRLVDLGFEDDIREVFDHFK+QRQTLLFSATMPTKIQ FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCEN+ Sbjct: 220 GEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENK 407 HSP 2 Score: 43.8986 bits (102), Expect = 2.512e-100 Identity = 19/24 (79.17%), Postives = 23/24 (95.83%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 L+ +EAVA+HGGKDQE+REYAISS Sbjct: 419 LKGVEAVAIHGGKDQEDREYAISS 442
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2) HSP 1 Score: 347.436 bits (890), Expect = 7.276e-100 Identity = 164/190 (86.32%), Postives = 185/190 (97.37%), Query Frame = 3 Query: 60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 VPGEGPF +I+CPSRELA+QTY+V+EQFL P+++AGYP++R LLCIGGVDMR+QL+VVK+GVHIVVATPGRLKD+LAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP KIQNFA+SALVKPV VNVGRAGAANLDVIQEVEYVK++A+I+YLLECLQKTPPPVL+FCEN+ Sbjct: 254 VPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLECLQKTPPPVLVFCENK 443 HSP 2 Score: 38.5058 bits (88), Expect = 7.276e-100 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAI 726 L+ +EAVA+HGGKDQEERE AI Sbjct: 455 LKGVEAVAIHGGKDQEERENAI 476
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1) HSP 1 Score: 343.969 bits (881), Expect = 1.138e-97 Identity = 164/190 (86.32%), Postives = 183/190 (96.32%), Query Frame = 3 Query: 60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 VPGEGPF LIVCPSRELARQT+EV+E FL P+ +AGYP++R LLCIGGVDMR+Q+EVVK+GVHIVVATPGRLKD+L+KKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMP KIQNFA+SALVKP+ VNVGRAGAANLDVIQEVEYVK+EA+I+YLLECLQKTPPPVL+FCE++ Sbjct: 245 VPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLECLQKTPPPVLVFCEHK 434 HSP 2 Score: 34.6538 bits (78), Expect = 1.138e-97 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 L+ +EAVA+HGGKD EER+ A S Sbjct: 446 LKGVEAVAIHGGKDDEERKDAFKS 469
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 2.132e-93 Identity = 160/188 (85.11%), Postives = 174/188 (92.55%), Query Frame = 3 Query: 66 GEGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 GEGP L++CPSRELA+QTY+VVEQF+ + + GYP LR+LLCIGGVDMRSQL+VVK+GVHIVVATPGRLKD+LAKKKM+LD CR LTLDEADRLVDLGFEDDIR VFDHFK+QRQTLLFSATMP KIQ FA SALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKT PPVLIFCEN+ Sbjct: 171 GEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENK 358 HSP 2 Score: 41.2022 bits (95), Expect = 2.132e-93 Identity = 17/23 (73.91%), Postives = 22/23 (95.65%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAIS 729 L+ +EAVA+HGGKDQE+R+YAIS Sbjct: 370 LKGVEAVAIHGGKDQEDRDYAIS 392
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 3.775e-79 Identity = 137/191 (71.73%), Postives = 160/191 (83.77%), Query Frame = 3 Query: 60 VPGEGPFCLIVCPSRELARQTYEVVEQFLTPM-RDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 + GEGPF LI+CPSRELARQTY++V F + ++ G+P LRTLL IGG+D+R Q + K+GVH+++ATPGRL D+L KKK+N C+YL LDEADRL+DLGFEDDIR V D+F QRQTLLFSATMP KIQ FARSALV PV VNVGRAGAANL+V QEVE+VK EAKIVYLLECLQKTPPPVLIFCEN+ Sbjct: 294 IQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLECLQKTPPPVLIFCENK 484 HSP 2 Score: 32.7278 bits (73), Expect = 3.775e-79 Identity = 13/24 (54.17%), Postives = 20/24 (83.33%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 L+++EAV++HG K Q+ERE AI + Sbjct: 496 LKQVEAVSIHGDKSQDERESAIKA 519 HSP 3 Score: 26.5646 bits (57), Expect = 3.775e-79 Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = 2 Query: 632 DVDDIHEYLLLK 667 DVDDI+EYLLLK Sbjct: 486 DVDDIYEYLLLK 497
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 3.351e-76 Identity = 128/187 (68.45%), Postives = 159/187 (85.03%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 EGP+ LI+CPSRELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E + Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKK 442 HSP 2 Score: 36.5798 bits (83), Expect = 3.351e-76 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 L+ +EAVA+HGGKDQEER AI + Sbjct: 454 LKGVEAVAIHGGKDQEERTKAIEA 477
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 3.351e-76 Identity = 128/187 (68.45%), Postives = 159/187 (85.03%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 EGP+ LI+CPSRELARQT+ ++E + +++ P LR LCIGG+ ++ Q+E ++ GVH++VATPGRL D+L KK ++LD CRYL LDEADR++D+GFE DIR +F +FK QRQTLLFSATMP KIQNFA+SALVKPVT+NVGRAGAA+LDVIQEVEYVK+EAK+VYLLECLQKTPPPVLIF E + Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKK 442 HSP 2 Score: 36.5798 bits (83), Expect = 3.351e-76 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 L+ +EAVA+HGGKDQEER AI + Sbjct: 454 LKGVEAVAIHGGKDQEERTKAIEA 477
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 2.349e-74 Identity = 123/187 (65.78%), Postives = 157/187 (83.96%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENR 629 EGP+ LI+CPSRELA+QT+E+++ + ++ G P++R+ L +GG+ + L+V+ RGVHIVVATPGRL DML KK + LD CRYL +DEADR++D+GFE+D+R +F FK QRQTLLFSATMP KIQNFARSALVKPVT+NVGRAGAA+++V Q+VEYVKQEAK+VYLL+CLQKT PPVLIF E + Sbjct: 252 EGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKK 438 HSP 2 Score: 36.5798 bits (83), Expect = 2.349e-74 Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 1 Query: 661 LERIEAVAVHGGKDQEEREYAISS 732 L+ +EAVA+HGGKDQEER A+ + Sbjct: 450 LKGVEAVAIHGGKDQEERSRAVDA 473
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.490e-32 Identity = 77/174 (44.25%), Postives = 102/174 (58.62%), Query Frame = 3 Query: 69 EGPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYLLECL 587 EGP ++ P+RELA Q Y ++F P +LR GGV Q + +K G IV+ATPGRL D+L K + + YL LDEADR+ DLGFE IR + + RQTLLFSATMP K++ AR L P+ V VG+ G+AN D+ Q V + +A K+ +LLE L Sbjct: 291 EGPIGVVCAPTRELAHQIYLEAKKFAKPY------NLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKL 458
BLAST of FC920897 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.529e-31 Identity = 78/211 (36.97%), Postives = 116/211 (54.98%), Query Frame = 3 Query: 72 GPFCLIVCPSRELARQTYEVVEQFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ---------------------RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYV----KQEAKIVYLLECLQKTPPPVLIFCENR 629 GP+ LI+ P+RELA+Q +F P+ GY + + +GG + Q ++ G I++ATPGRLKDM+ K + + CRY+ +DEADR+VDLGFE D+ + D A R T LFSATMP ++ AR L+KP TV +G AG A V Q VE+V K++A+++ +L + PPP+++F + Sbjct: 391 GPYALIMAPTRELAQQIETETRRFALPL---GY---KCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVEQRVEFVHGDEKKKARLIEILRTI-GLPPPIIVFVNQK 594 HSP 2 Score: 24.6386 bits (52), Expect = 1.529e-31 Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1 Query: 670 IEAVAVHGGKDQEEREYAISS 732 + V +H GK QE+RE A+ + Sbjct: 609 MSGVTLHSGKSQEQREAALQA 629 The following BLAST results are available for this feature:
BLAST of FC920897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920897 ID=FC920897; Name=FC920897; organism=Citrus clementina; type=EST; length=734bpback to top |