FC921104

Overview
NameFC921104
Unique NameFC921104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_MOUSE (60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_MACFA (60S ribosomal protein L30 OS=Macaca fascicularis GN=RPL30 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_HUMAN (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_CHICK (60S ribosomal protein L30 OS=Gallus gallus GN=RPL30 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_BOVIN (60S ribosomal protein L30 OS=Bos taurus GN=RPL30 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_ICTPU (60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK   + +R  K KL+IL+NNCP LRKSEIEYYAML+K GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLSKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_SPOFR (60S ribosomal protein L30 OS=Spodoptera frugiperda GN=RpL30 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RLALVMKSGKY LGYK  L++LR  K KL+I++ N PPLRKSEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I DPGDSDI  +LP
Sbjct:   12 ESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.432e-36
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGD 419
            ESIN+RL LVMKSGKY LG K  L+ LR  K KLII++NN P LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKYFRV  L+I DPGDSDI +S+P +
Sbjct:    9 ESINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDIIRSMPAE 108          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30B_SCHPO (60S ribosomal protein L30-2 OS=Schizosaccharomyces pombe GN=rpl30b PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.249e-32
Identity = 62/93 (66.67%), Postives = 80/93 (86.02%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            ++IN++LAL MKSGKY LGYK+ L++LR+ K KLI+++ N PPLRKSE+EYYAML++  VHHY+GNN+DLGTACGK FRV  L++ID GDSDI
Sbjct:   22 DTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDI 114          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30A_SCHPO (60S ribosomal protein L30-1 OS=Schizosaccharomyces pombe GN=rpl30a PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.632e-32
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            ++IN +LAL MKSGKY LGYK+ L++LR+ K KLI+++ NCPPLRKSE+EYYAML+K  VHHY G N+DLGTACGK FRV  L+I D GDSDI
Sbjct:   14 DTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDI 106          
The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30_MOUSE1.990e-3874.4960S ribosomal protein L30 OS=Mus musculus GN=Rpl30... [more]
RL30_MACFA1.990e-3874.4960S ribosomal protein L30 OS=Macaca fascicularis G... [more]
RL30_HUMAN1.990e-3874.4960S ribosomal protein L30 OS=Homo sapiens GN=RPL30... [more]
RL30_CHICK1.990e-3874.4960S ribosomal protein L30 OS=Gallus gallus GN=RPL3... [more]
RL30_BOVIN1.990e-3874.4960S ribosomal protein L30 OS=Bos taurus GN=RPL30 P... [more]
RL30_ICTPU3.753e-3772.4560S ribosomal protein L30 OS=Ictalurus punctatus G... [more]
RL30_SPOFR6.401e-3772.4560S ribosomal protein L30 OS=Spodoptera frugiperda... [more]
RL30_BRABE2.432e-3672.0060S ribosomal protein L30 OS=Branchiostoma belcher... [more]
RL30B_SCHPO1.249e-3266.6760S ribosomal protein L30-2 OS=Schizosaccharomyces... [more]
RL30A_SCHPO1.632e-3267.7460S ribosomal protein L30-1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC32101B07EF RVDevelopN Citrus clementina cDNA clone C32101B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bp
GGGTGCGGCGTCTCCTCTTCTAGGGCTGGTTTGTTATTTTGCCGCCGCTC
GCGAACTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGACCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTATAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATTGATCCAGGTGATTCTGATATCAC
CAAGTCACTTCCAGGAGACCACTAAGCCTGATTCAGAGTTAAAACCTGCA
TCTTAGTGATCAGGTTGTTTAGTTGCAGAATGCTGTTTCTCAATTCAAAA
TTTCCTTTGAACATCCTTGAGATGCAGTTTCCTATATACTCCAATTTTGA
ATGTCATGCTGGATATTTTTGTATGTTTCAATTTTTGCATTT
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