FC921104

Overview
NameFC921104
Unique NameFC921104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_TRYBB (60S ribosomal protein L30 OS=Trypanosoma brucei brucei GN=RPL30 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.880e-29
Identity = 56/96 (58.33%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKS 407
            ++IN ++ LVMKSGKY LG +  L++LR  + KL+++S NCPP+RK+EIEYY  L+K  +HHY+GNN+DLGTACG++FR   LSI D GDSDIT +
Sbjct:   10 DTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPIHHYSGNNLDLGTACGRHFRACVLSITDVGDSDITSA 105          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_NEUCR (60S ribosomal protein L30 OS=Neurospora crassa GN=rpl-30 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.912e-29
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            +SI  +LALV+KSGK  LGY++ L++LR+ K KLI++S N PPLRKSE+EYY+M++K  VHHY G N++LGTACGK FR S ++I+D GDSDI
Sbjct:   11 QSIGAKLALVIKSGKVVLGYRSTLKALRSGKAKLILISANTPPLRKSELEYYSMMSKTAVHHYTGTNIELGTACGKLFRCSTMAILDAGDSDI 103          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_DICDI (60S ribosomal protein L30 OS=Dictyostelium discoideum GN=rpl30 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.094e-28
Identity = 61/97 (62.89%), Postives = 79/97 (81.44%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            E+I ++LALVMKSGK  LGYK+ L++LR  K KLI+L++N P +R+SEIEYYAML+K  VH Y+GNNVDLGTA G+++RVS +SI D GDSDI  +L
Sbjct:   12 ENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSIRRSEIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTAL 108          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_YARLI (60S ribosomal protein L30 OS=Yarrowia lipolytica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.264e-28
Identity = 55/93 (59.14%), Postives = 74/93 (79.57%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            +++N +L L +KSGKYTLGYK+ +++LR  K KL+I++ N P LRKSEIEYYAMLAK  VHH+ G N +LGT+CG+ FRV  ++I+D GDSDI
Sbjct:   11 DNVNAKLGLAIKSGKYTLGYKSTIKALRQGKAKLVIIAGNTPALRKSEIEYYAMLAKCTVHHFQGGNNELGTSCGRLFRVGAVTIMDAGDSDI 103          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_YEAST (60S ribosomal protein L30 OS=Saccharomyces cerevisiae GN=RPL30 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.210e-27
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            ESIN +LALV+KSGKYTLGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +SI++ GDSDI  +L
Sbjct:    8 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 104          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_CANGA (60S ribosomal protein L30 OS=Candida glabrata GN=RPL30 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.210e-27
Identity = 59/97 (60.82%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            ESIN +LALV+KSGK+TLGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  +S++D GDSDI  +L
Sbjct:    8 ESINQKLALVVKSGKFTLGYKSTIKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVSVLDAGDSDILTAL 104          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_LEIMA (60S ribosomal protein L30 OS=Leishmania major GN=RPL30 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.064e-27
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            +IN +L LVMKSGKY LG +  L +LR  + KL++++NNCPP+R++E+EYY  L+K  +HHY+GNN+DLGTACGK FR   LS+ + GDSDI
Sbjct:   11 TINAKLQLVMKSGKYVLGTQQALTTLRQGRSKLVVIANNCPPIRRAEVEYYCTLSKTPIHHYSGNNLDLGTACGKPFRTCVLSVTNVGDSDI 102          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_ASHGO (60S ribosomal protein L30 OS=Ashbya gossypii GN=RPL30 PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.064e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            E+IN +LALV+KSGKYTLGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++++D GDSDI  +L
Sbjct:    8 ENINQKLALVIKSGKYTLGYKSTIKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTVLDAGDSDILTTL 104          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_KLULA (60S ribosomal protein L30 OS=Kluyveromyces lactis GN=RPL30 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.005e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            E+IN +LALV+KSGKY+LGYK+ ++SLR  K KLII++ N P LRKSE+EYYAML+K  V+++ G N +LGTA GK FRV  ++I+D GDSDI  +L
Sbjct:    8 ENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFRVGVVTILDAGDSDILTAL 104          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METTH (50S ribosomal protein L30e OS=Methanobacterium thermoautotrophicum GN=rpl30e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.091e-15
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            I+  + + + +G   LG K  ++SL+  KGKL+++++N P   K +IEYYA L+++ V+ + G +V+LG+ CGK F V  L I DPGDS I
Sbjct:    3 IDRGIRVAVDTGNVILGSKRTIQSLKLGKGKLVVMASNIPEDLKEDIEYYAKLSEIPVYTHEGTSVELGSVCGKPFTVGALLIQDPGDSTI 93          
The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30_TRYBB2.880e-2958.3360S ribosomal protein L30 OS=Trypanosoma brucei br... [more]
RL30_NEUCR4.912e-2961.2960S ribosomal protein L30 OS=Neurospora crassa GN=... [more]
RL30_DICDI1.094e-2862.8960S ribosomal protein L30 OS=Dictyostelium discoid... [more]
RL30_YARLI9.264e-2859.1460S ribosomal protein L30 OS=Yarrowia lipolytica G... [more]
RL30_YEAST1.210e-2761.8660S ribosomal protein L30 OS=Saccharomyces cerevis... [more]
RL30_CANGA1.210e-2760.8260S ribosomal protein L30 OS=Candida glabrata GN=R... [more]
RL30_LEIMA2.064e-2757.6160S ribosomal protein L30 OS=Leishmania major GN=R... [more]
RL30_ASHGO2.064e-2759.7960S ribosomal protein L30 OS=Ashbya gossypii GN=RP... [more]
RL30_KLULA6.005e-2759.7960S ribosomal protein L30 OS=Kluyveromyces lactis ... [more]
RL30E_METTH3.091e-1541.7650S ribosomal protein L30e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionC32101B07EF RVDevelopN Citrus clementina cDNA clone C32101B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bp
GGGTGCGGCGTCTCCTCTTCTAGGGCTGGTTTGTTATTTTGCCGCCGCTC
GCGAACTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGACCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTATAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATTGATCCAGGTGATTCTGATATCAC
CAAGTCACTTCCAGGAGACCACTAAGCCTGATTCAGAGTTAAAACCTGCA
TCTTAGTGATCAGGTTGTTTAGTTGCAGAATGCTGTTTCTCAATTCAAAA
TTTCCTTTGAACATCCTTGAGATGCAGTTTCCTATATACTCCAATTTTGA
ATGTCATGCTGGATATTTTTGTATGTTTCAATTTTTGCATTT
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