FC921104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRIL (50S ribosomal protein L30e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl30e PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14 Identity = 36/93 (38.71%), Postives = 60/93 (64.52%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404 I+ L + + +GK +G+K V +++ TS KL+IL+ N P K ++EYYA LA V V + G++++LG A + ++ L++IDPG S+I K Sbjct: 4 ISRELQVAISTGKVVMGFKEVKKTILTSTPKLVILAANAPKWAKEDVEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVIDPGQSEILK 96
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRFU (50S ribosomal protein L30e OS=Pyrococcus furiosus GN=rpl30e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13 Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 L M++GK LG +R +T KLII++ N P K +I YYA L+ + V+ + G +V+LGT GK F V+ L+I+DPG+S I Sbjct: 7 LRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKI 93
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_SULSO (50S ribosomal protein L30e OS=Sulfolobus solfataricus GN=rpl30e PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12 Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 123 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 S L ++K+GK G K ++ ++ SK K++I+++ K +I +YA L+ + V+ Y G+ DLGT CGK F +S +SIID GDS I Sbjct: 10 SFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKI 101
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METKA (50S ribosomal protein L30e OS=Methanopyrus kandleri GN=rpl30e PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12 Identity = 33/93 (35.48%), Postives = 58/93 (62.37%), Query Frame = 3 Query: 120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 + I ++ + +++G LG ++ L+ K KL+I++ NCP + +IEYYA LA V V Y G ++DLG CG+ V+ ++++D G+SD+ Sbjct: 2 QEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDL 94
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METS3 (50S ribosomal protein L30e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12 Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410 ++ + + + +G TLG + ++SL+ KG+L+I++ N P ++EYY L+ + + Y G++V+LG+ CGK F V+ L + DPGDS I L Sbjct: 4 VDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDL 98
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_THESM (50S ribosomal protein L30e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12 Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 L +++GK +G +R RT + KLII++ N P K +I YYA L+ + V+ + G +V+LGT GK F ++ ++I++PG+S I Sbjct: 7 LRKAIETGKVVIGSNETMRLARTGEAKLIIMAKNAPKEVKDDINYYAGLSSIPVYEFEGTSVELGTLLGKPFVIALMAIVEPGESKI 93
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRHO (50S ribosomal protein L30e OS=Pyrococcus horikoshii GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12 Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 L +++GK LG +R +T KLII++ N P K +I YYA L+ + V+ + G +V+LGT GK F V+ L+I+DPG+S I Sbjct: 7 LKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRI 93
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAB (50S ribosomal protein L30e OS=Pyrococcus abyssi GN=rpl30e PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12 Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 L +++GK LG +R +T KLII++ N P K +I YYA L+ + V+ + G +V+LGT GK F V+ L+I+DPG+S I Sbjct: 7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRI 93
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_SULTO (50S ribosomal protein L30e OS=Sulfolobus tokodaii GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12 Identity = 30/93 (32.26%), Postives = 58/93 (62.37%), Query Frame = 3 Query: 132 NRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410 + L ++++GK G K ++ ++T K K++I+++ K +I YA ++ + V+ YNG+ +LGT CGK F +S + +IDPG+S + + + Sbjct: 9 SELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEI 101
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_AERPE (50S ribosomal protein L30e OS=Aeropyrum pernix GN=rpl30e PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12 Identity = 32/92 (34.78%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 123 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 S+ L ++K+G Y +G+K L++++ + K I+++ N PP + ++EYYA LA + + Y G +D+G G+ VS L++ID G S I Sbjct: 2 SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRI 93 The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bpback to top |