FC921104

Overview
NameFC921104
Unique NameFC921104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRIL (50S ribosomal protein L30e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 36/93 (38.71%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404
            I+  L + + +GK  +G+K V +++ TS  KL+IL+ N P   K ++EYYA LA V V  + G++++LG A  +  ++  L++IDPG S+I K
Sbjct:    4 ISRELQVAISTGKVVMGFKEVKKTILTSTPKLVILAANAPKWAKEDVEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVIDPGQSEILK 96          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRFU (50S ribosomal protein L30e OS=Pyrococcus furiosus GN=rpl30e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            L   M++GK  LG    +R  +T   KLII++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I
Sbjct:    7 LRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESKI 93          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_SULSO (50S ribosomal protein L30e OS=Sulfolobus solfataricus GN=rpl30e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            S    L  ++K+GK   G K  ++ ++ SK K++I+++      K +I +YA L+ + V+ Y G+  DLGT CGK F +S +SIID GDS I
Sbjct:   10 SFEGELKSLLKTGKVIFGAKRAIKYIKLSKVKMVIVASTLRGDLKQDIMHYAKLSNIPVYEYKGSGWDLGTLCGKPFMISTISIIDEGDSKI 101          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METKA (50S ribosomal protein L30e OS=Methanopyrus kandleri GN=rpl30e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 33/93 (35.48%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            + I  ++ + +++G   LG    ++ L+  K KL+I++ NCP   + +IEYYA LA V V  Y G ++DLG  CG+   V+ ++++D G+SD+
Sbjct:    2 QEIERQIRMAVETGDVVLGSNQTIKLLKLGKPKLVIVAANCPAEIREDIEYYAELADVPVFVYPGTSMDLGDVCGRPHVVASMAVLDDGESDL 94          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METS3 (50S ribosomal protein L30e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            ++  + + + +G  TLG +  ++SL+  KG+L+I++ N P     ++EYY  L+ +  + Y G++V+LG+ CGK F V+ L + DPGDS I   L
Sbjct:    4 VDRSIRVAVDTGDVTLGSEKSIQSLKLGKGQLVIVAANTPKDIVEDVEYYTNLSDIPSYTYEGSSVELGSVCGKPFTVATLIVNDPGDSTILDDL 98          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_THESM (50S ribosomal protein L30e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            L   +++GK  +G    +R  RT + KLII++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F ++ ++I++PG+S I
Sbjct:    7 LRKAIETGKVVIGSNETMRLARTGEAKLIIMAKNAPKEVKDDINYYAGLSSIPVYEFEGTSVELGTLLGKPFVIALMAIVEPGESKI 93          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRHO (50S ribosomal protein L30e OS=Pyrococcus horikoshii GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            L   +++GK  LG    +R  +T   KLII++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I
Sbjct:    7 LKKALETGKVILGSNETIRLAKTGGAKLIIVARNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRI 93          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAB (50S ribosomal protein L30e OS=Pyrococcus abyssi GN=rpl30e PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  138 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            L   +++GK  LG    +R  +T   KLII++ N P   K +I YYA L+ + V+ + G +V+LGT  GK F V+ L+I+DPG+S I
Sbjct:    7 LRKALETGKVILGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVASLAIVDPGESRI 93          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_SULTO (50S ribosomal protein L30e OS=Sulfolobus tokodaii GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 30/93 (32.26%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  132 NRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSL 410
            + L  ++++GK   G K  ++ ++T K K++I+++      K +I  YA ++ + V+ YNG+  +LGT CGK F +S + +IDPG+S + + +
Sbjct:    9 SELKTLLRTGKVVFGSKKTIKMVKTGKVKMVIIASTLRQDLKDDILAYAKISNIPVYQYNGSAYELGTLCGKPFMISTIGVIDPGESRLLEEI 101          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_AERPE (50S ribosomal protein L30e OS=Aeropyrum pernix GN=rpl30e PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 32/92 (34.78%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  123 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            S+   L  ++K+G Y +G+K  L++++  + K I+++ N PP  + ++EYYA LA + +  Y G  +D+G   G+   VS L++ID G S I
Sbjct:    2 SVEKALKDLVKTGVYAMGFKQSLKAVKAGEAKAIVIAENTPPELRRKLEYYAKLAGIPIIVYRGTRMDMGLVMGRRHGVSVLAVIDEGSSRI 93          
The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30E_PYRIL7.614e-1438.7150S ribosomal protein L30e OS=Pyrobaculum islandic... [more]
RL30E_PYRFU6.446e-1342.5350S ribosomal protein L30e OS=Pyrococcus furiosus ... [more]
RL30E_SULSO1.099e-1239.1350S ribosomal protein L30e OS=Sulfolobus solfatari... [more]
RL30E_METKA1.099e-1235.4850S ribosomal protein L30e OS=Methanopyrus kandler... [more]
RL30E_METS31.436e-1235.7950S ribosomal protein L30e OS=Methanobrevibacter s... [more]
RL30E_THESM2.449e-1237.9350S ribosomal protein L30e OS=Thermococcus sibiric... [more]
RL30E_PYRHO2.449e-1241.3850S ribosomal protein L30e OS=Pyrococcus horikoshi... [more]
RL30E_PYRAB2.449e-1241.3850S ribosomal protein L30e OS=Pyrococcus abyssi GN... [more]
RL30E_SULTO7.127e-1232.2650S ribosomal protein L30e OS=Sulfolobus tokodaii ... [more]
RL30E_AERPE7.127e-1234.7850S ribosomal protein L30e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32101B07EF RVDevelopN Citrus clementina cDNA clone C32101B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bp
GGGTGCGGCGTCTCCTCTTCTAGGGCTGGTTTGTTATTTTGCCGCCGCTC
GCGAACTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGACCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTATAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATTGATCCAGGTGATTCTGATATCAC
CAAGTCACTTCCAGGAGACCACTAAGCCTGATTCAGAGTTAAAACCTGCA
TCTTAGTGATCAGGTTGTTTAGTTGCAGAATGCTGTTTCTCAATTCAAAA
TTTCCTTTGAACATCCTTGAGATGCAGTTTCCTATATACTCCAATTTTGA
ATGTCATGCTGGATATTTTTGTATGTTTCAATTTTTGCATTT
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