FC921104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRCJ (50S ribosomal protein L30e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12 Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404 I L + + +GK +G + +SL T KL+I++ N P + +IEYYA LA V + + G++++LG A + ++ L+++DPG S+I K Sbjct: 4 IGRELQVAINTGKVIIGLRETKKSLLTGAPKLVIIAANAPRWAREDIEYYAKLAGVPIFTFPGSSIELGAAAKRPHKIMALAVVDPGQSEILK 96
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METST (50S ribosomal protein L30e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl30e PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12 Identity = 33/91 (36.26%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 I + + + +GK LG +++++ G+L I++ N P K++IE Y+ L+++ V+ + G++V+LG+ CGK F VS L I +PGDS+I Sbjct: 3 IERGIRVAVDTGKVILGSNKAIQAIKLGNGELAIMAENTPKNVKADIEAYSKLSEMPVYTFEGSSVELGSICGKPFTVSVLIIQEPGDSNI 93
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METVS (50S ribosomal protein L30e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11 Identity = 31/91 (34.07%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 IN + + + +G LG K +++++ +GKL+I++ NC K +I YY L++ V+ + +++LG CGK F VS L +++PG+S I Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAI 99
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAE (50S ribosomal protein L30e OS=Pyrobaculum aerophilum GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11 Identity = 33/93 (35.48%), Postives = 57/93 (61.29%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404 I+ L + + +GK +G++ ++L T KLIIL+ N P + +IEYYA LA V + + G++++LG A + ++ L++ID G S+I K Sbjct: 4 ISRELQVAINTGKVVIGFEETKKALLTGAPKLIILAANAPKWARDDIEYYAKLAGVPIFVFPGSSIELGAAAKRPHKIMALAVIDAGQSEILK 96
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METM5 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl30e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11 Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 IN + + + +G LG K +++++ +G+L+I+++NC K +I YY L++ V+ + +++LG CGK F VS L +++PG+S I Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVKEDIFYYTKLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAI 99
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METM7 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11 Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 IN + + + +G LG K +++++ +G+L+I+++NC + +I YY L++ V+ + +++LG CGK F VS L +++PG+S I Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAI 99
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METM6 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11 Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 IN + + + +G LG K +++++ +G+L+I+++NC + +I YY L++ V+ + +++LG CGK F VS L +++PG+S I Sbjct: 9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQSTSIELGAICGKPFPVSALLVLEPGNSAI 99
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_THENV (50S ribosomal protein L30e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11 Identity = 31/93 (33.33%), Postives = 57/93 (61.29%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404 I+ L + + +GK +G++ +++ KL+IL+ N P + +IEYYA LA V V + G++++LG A + ++ L+++DPG S+I K Sbjct: 4 ISRELQVALNTGKVIIGFEETKKAVLAGTPKLVILAANAPKWARGDIEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVLDPGQSEILK 96
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METMP (50S ribosomal protein L30e OS=Methanococcus maripaludis GN=rpl30e PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11 Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 IN + + + +G LG K +++++ +G+L+I+++NC + +I YY L++ V+ + +++LG CGK F VS L +++PG+S I Sbjct: 3 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAI 93
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METJA (50S ribosomal protein L30e OS=Methanocaldococcus jannaschii GN=rpl30e PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11 Identity = 29/91 (31.87%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398 +N + + +GK LG K ++ ++ +GKL++L+ N P + +++YYA L+ + V+ + +++LG CGK F V+ L ++D G S+I Sbjct: 9 VNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNI 99 The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bpback to top |