FC921104

Overview
NameFC921104
Unique NameFC921104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRCJ (50S ribosomal protein L30e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404
            I   L + + +GK  +G +   +SL T   KL+I++ N P   + +IEYYA LA V +  + G++++LG A  +  ++  L+++DPG S+I K
Sbjct:    4 IGRELQVAINTGKVIIGLRETKKSLLTGAPKLVIIAANAPRWAREDIEYYAKLAGVPIFTFPGSSIELGAAAKRPHKIMALAVVDPGQSEILK 96          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METST (50S ribosomal protein L30e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12
Identity = 33/91 (36.26%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            I   + + + +GK  LG    +++++   G+L I++ N P   K++IE Y+ L+++ V+ + G++V+LG+ CGK F VS L I +PGDS+I
Sbjct:    3 IERGIRVAVDTGKVILGSNKAIQAIKLGNGELAIMAENTPKNVKADIEAYSKLSEMPVYTFEGSSVELGSICGKPFTVSVLIIQEPGDSNI 93          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METVS (50S ribosomal protein L30e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11
Identity = 31/91 (34.07%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            IN  + + + +G   LG K  +++++  +GKL+I++ NC    K +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGKLVIIAGNCAKDVKEDIFYYTKLSETPVYTHQVTSIELGAICGKPFPVSALLVLEPGNSAI 99          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_PYRAE (50S ribosomal protein L30e OS=Pyrobaculum aerophilum GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 33/93 (35.48%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404
            I+  L + + +GK  +G++   ++L T   KLIIL+ N P   + +IEYYA LA V +  + G++++LG A  +  ++  L++ID G S+I K
Sbjct:    4 ISRELQVAINTGKVVIGFEETKKALLTGAPKLIILAANAPKWARDDIEYYAKLAGVPIFVFPGSSIELGAAAKRPHKIMALAVIDAGQSEILK 96          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METM5 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            IN  + + + +G   LG K  +++++  +G+L+I+++NC    K +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVKEDIFYYTKLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAI 99          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METM7 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            IN  + + + +G   LG K  +++++  +G+L+I+++NC    + +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAI 99          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METM6 (50S ribosomal protein L30e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            IN  + + + +G   LG K  +++++  +G+L+I+++NC    + +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I
Sbjct:    9 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIIADNCAKDVREDIFYYTQLSETPVYTHQSTSIELGAICGKPFPVSALLVLEPGNSAI 99          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_THENV (50S ribosomal protein L30e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 31/93 (33.33%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITK 404
            I+  L + + +GK  +G++   +++     KL+IL+ N P   + +IEYYA LA V V  + G++++LG A  +  ++  L+++DPG S+I K
Sbjct:    4 ISRELQVALNTGKVIIGFEETKKAVLAGTPKLVILAANAPKWARGDIEYYAKLAGVPVFIFPGSSIELGAAAKRPHKIMALAVLDPGQSEILK 96          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METMP (50S ribosomal protein L30e OS=Methanococcus maripaludis GN=rpl30e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            IN  + + + +G   LG K  +++++  +G+L+I+++NC    + +I YY  L++  V+ +   +++LG  CGK F VS L +++PG+S I
Sbjct:    3 INRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPVSALLVLEPGNSAI 93          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30E_METJA (50S ribosomal protein L30e OS=Methanocaldococcus jannaschii GN=rpl30e PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 29/91 (31.87%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  126 INNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            +N  +   + +GK  LG K  ++ ++  +GKL++L+ N P   + +++YYA L+ + V+ +   +++LG  CGK F V+ L ++D G S+I
Sbjct:    9 VNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAALLVLDEGLSNI 99          
The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30E_PYRCJ9.307e-1234.4150S ribosomal protein L30e OS=Pyrobaculum calidifo... [more]
RL30E_METST9.307e-1236.2650S ribosomal protein L30e OS=Methanosphaera stadt... [more]
RL30E_METVS1.216e-1134.0750S ribosomal protein L30e OS=Methanococcus vannie... [more]
RL30E_PYRAE1.588e-1135.4850S ribosomal protein L30e OS=Pyrobaculum aerophil... [more]
RL30E_METM51.588e-1132.9750S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_METM72.073e-1131.8750S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_METM62.073e-1131.8750S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_THENV2.708e-1133.3350S ribosomal protein L30e OS=Thermoproteus neutro... [more]
RL30E_METMP2.708e-1131.8750S ribosomal protein L30e OS=Methanococcus maripa... [more]
RL30E_METJA7.879e-1131.8750S ribosomal protein L30e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionC32101B07EF RVDevelopN Citrus clementina cDNA clone C32101B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bp
GGGTGCGGCGTCTCCTCTTCTAGGGCTGGTTTGTTATTTTGCCGCCGCTC
GCGAACTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGACCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTATAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATTGATCCAGGTGATTCTGATATCAC
CAAGTCACTTCCAGGAGACCACTAAGCCTGATTCAGAGTTAAAACCTGCA
TCTTAGTGATCAGGTTGTTTAGTTGCAGAATGCTGTTTCTCAATTCAAAA
TTTCCTTTGAACATCCTTGAGATGCAGTTTCCTATATACTCCAATTTTGA
ATGTCATGCTGGATATTTTTGTATGTTTCAATTTTTGCATTT
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