FC921594

Overview
NameFC921594
Unique NameFC921594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:2..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  362 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            G  +D  ++RK    V+K+ST     + +   VDPD + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+
Sbjct:   73 GTILDRVNERKA---VVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 53/173 (30.64%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  173 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            R L+ ++R L+ + +R   EL                    P   G ++E+L+   ED A                  +++        + +   ++ + LKPG  V +++ +  I++ LPSE D  V   EV E+PT  YNDIGGL+KQ+QEL EAI LP+ H E F+K+G+
Sbjct:   26 RQLELQVRTLEADKERLERELSRLRMEMSRLRQP-------PAFAGTLIELLD---EDRA------------------IVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGI 170          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++ ++T    ++ V+ ++D + LKPG  V ++K S  ++D LP E DS ++ +  DEKP   Y DIGGL+ Q QE+ EA+ LP+TH E +Q++G+
Sbjct:   98 IVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGI 192          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  362 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+
Sbjct:   73 GTILDKVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  362 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+
Sbjct:   73 GTILDKVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  362 GANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            G  +D  ++RK    V+K+ST     + +   VDP+ + PG  V +N+ +  I++ LP E D R  AME++EKP   + DIGGL  QI+++ E + LP+ + E F+K+G+
Sbjct:   73 GTILDRVNERKA---VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 51/212 (24.06%), Postives = 96/212 (45.28%), Query Frame = 2
Query:   89 MATAMVEDPNLEDD-----------QLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            MATAMV DP   +             + S   DD+    + L  ++  ++ + +    EL +                 +P ++G  +E+++ N                       ++ ++T    ++ ++  ++ + LKP   VG+++ S  ++D LP E DS +  +   EKP   YNDIGG + Q QE+ EA+ LP+TH E ++++G+
Sbjct:    1 MATAMVLDPKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNN---------------------AIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGI 191          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 50/170 (29.41%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  182 DNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            D  +R+L+E+++    EL+                   PY+   +++IL          DG             V++++S+   + + V   +D  KLKPG LV + +    I++ LP   D+ VK+ EV EKP   Y+DIGGL +QI E+ E I LP+ + E F+++G+
Sbjct:   17 DPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILP---------DGK------------VIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGI 165          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 34/95 (35.79%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  ++ DEKP   Y+DIGG++ Q QE+ EA+ LP+TH E ++++G+
Sbjct:   99 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI 193          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 55/194 (28.35%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  122 EDDQLSSMTADDIV----RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ED+       DD V    R  R L+ ++R+L+ + +R   EL                    P   G+++E+L+   +D A                  +++        + +   +D  KL+PG  V +++ +  I++ LP+  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+
Sbjct:    3 EDEAQFHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGSVIEVLD---DDRA------------------IVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGI 168          
The following BLAST results are available for this feature:
BLAST of FC921594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PSMR_METM51.894e-1538.18Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_THEON3.231e-1530.64Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS6B_CAEEL4.220e-1540.00Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PSMR_METMP5.511e-1537.27Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM75.511e-1537.27Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM65.511e-1537.27Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS6B_SOLTU9.400e-1524.0626S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_SULTO1.603e-1429.41Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS6B_MANSE1.603e-1435.7926S protease regulatory subunit 6B OS=Manduca sext... [more]
PSMR_PYRFU2.094e-1428.35Proteasome-activating nucleotidase OS=Pyrococcus f... [more]

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Properties
Property NameValue
Genbank descriptionC32107B06EF RVDevelopN Citrus clementina cDNA clone C32107B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921594 ID=FC921594; Name=FC921594; organism=Citrus clementina; type=EST; length=692bp
GGAACAAGTTGGAGTTTTTAACTTTTGAGCCACACTCTTGTCTCTCTTTT
ATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCATATGGCGACGGCG
ATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGTCTTCCATGACGGC
CGATGATATTGTTCGGGCGTCGCGGCTACTCGACAACGAGATTCGTGTCC
TAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGATTCGTTCAAGGAG
AAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATAAGCAGCTTCCTTA
CTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAACCCAGAGGATGAGG
CTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCAAAGGAAGGGTAAA
TGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCTTTCTTCCAGTAGT
CGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGATCTGGTTGGAGTTA
ATAAGGATAGTTACTTGATCCTGGACACACTGCCTTCTGAGTATGATTCT
CGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTGAAGATTATAATGA
CATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTTGAGGCTATTGTGC
TGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGGGGTTC
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