FC921594

Overview
NameFC921594
Unique NameFC921594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:2..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 54/188 (28.72%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  128 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + V   +D   +KPG  V +N+    IL+ LP + D  VK ME+ EKP   Y++IGGLE+QI+EL E + LP+   E F+++GV
Sbjct:    6 DTIRDASSSDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGV 165          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 50/176 (28.41%), Postives = 84/176 (47.73%), Query Frame = 2
Query:  164 RASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            R  R L+ ++R+L+ + +R   EL                    P   G ++E+L+   ED A                  +++        + +   +D  KL+PG  V +++ +  +++ LP+  D  V   EV E+P   YNDIGGL+KQ+QEL EAI LP+ H E F+++G+
Sbjct:   24 RRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQP-------PAFAGTVIEVLD---EDRA------------------IVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGI 171          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  341 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            E++AEED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G+
Sbjct:   92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGI 219          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 2
Query:  341 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            E++AEED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGLE QIQE+ EA+ LP+TH E ++ +G+
Sbjct:   92 EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGI 219          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 36/96 (37.50%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  404 VVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            V++++S      + +   ++ +++KPG    +N+ S  I++ LP+ YD+++  MEV E P+E Y +IGGLEKQI E+ EA+ LP+   E F+K+G+
Sbjct:   89 VIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGI 184          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 52/188 (27.66%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  128 DQLSSMTADDIVRASRLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            D +   ++ D V+  RLL+ +I+ L+ E++    EL+ +                 P L+  +V  L++ P+                    V++++S+   + + +   +D   +KPG  V +N+    IL+ LP + D  VK ME+ E+P   Y++IGGLE+QI+EL E + LP+ + E F+++GV
Sbjct:    6 DTIRDASSPDEVQLVRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLS--------PPLIEAVV--LDVLPDGR------------------VLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGV 165          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 34/95 (35.79%), Postives = 61/95 (64.21%), Query Frame = 2
Query:  407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++ + T    ++ ++  VD + L+PG  V ++  +  I+  L  + D  V  M++D+ PTE Y+DIGGLE QIQE+ E++ LP+TH E ++++G+
Sbjct:  119 IVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI 213          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 48/173 (27.75%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  173 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            R L+N+    + E+++   ELD                   P ++G +++++                     K   +++++S      + V   +D  KL PG  V +N+ +  I + +PS  +  V AMEV E    DY+ IGGL++QIQEL EA+ LP+T  ERF ++G+
Sbjct:   53 RYLENQKIKYEREIRKLQSELDRMKTS--------------PLIIGTVIDVI---------------------KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGI 190          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  341 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ED+ EED + +D           L+        ++ +S     ++ ++  VD D+L+PG  + ++     ++  L  E D  V  M+V++ P E Y DIGGL+ QIQE+ EA+ LP+TH E ++ +G+
Sbjct:   97 EDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI 224          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 37/128 (28.91%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  341 EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            E+  EE+ A +D           L+     +  ++ T+     ++ ++  VD ++L+PG  V +N  ++ ++  L  + D  V  M++++ P E Y D+GGL++QIQE+ EA+ LP+TH E ++++G+
Sbjct:   92 EERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGI 219          
The following BLAST results are available for this feature:
BLAST of FC921594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PSMR_SULIA4.665e-1428.72Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_PYRHO6.093e-1428.41Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PRS4B_ARATH6.093e-1432.0326S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH6.093e-1432.0326S proteasome regulatory subunit 4 homolog A OS=A... [more]
PSMR_METPE7.958e-1437.50Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_SULSO1.039e-1327.66Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS4_YEAST1.357e-1335.7926S protease regulatory subunit 4 homolog OS=Sacch... [more]
PSMR_METMA1.773e-1327.75Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_ORYSJ1.773e-1331.2526S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4_CAEEL1.773e-1328.91Probable 26S protease regulatory subunit 4 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC32107B06EF RVDevelopN Citrus clementina cDNA clone C32107B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921594 ID=FC921594; Name=FC921594; organism=Citrus clementina; type=EST; length=692bp
GGAACAAGTTGGAGTTTTTAACTTTTGAGCCACACTCTTGTCTCTCTTTT
ATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCATATGGCGACGGCG
ATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGTCTTCCATGACGGC
CGATGATATTGTTCGGGCGTCGCGGCTACTCGACAACGAGATTCGTGTCC
TAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGATTCGTTCAAGGAG
AAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATAAGCAGCTTCCTTA
CTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAACCCAGAGGATGAGG
CTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCAAAGGAAGGGTAAA
TGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCTTTCTTCCAGTAGT
CGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGATCTGGTTGGAGTTA
ATAAGGATAGTTACTTGATCCTGGACACACTGCCTTCTGAGTATGATTCT
CGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTGAAGATTATAATGA
CATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTTGAGGCTATTGTGC
TGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGGGGTTC
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