FC921594

Overview
NameFC921594
Unique NameFC921594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:2..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 40/132 (30.30%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  296 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            P ++G +V++++ N                      V++++S      +     V+PD +KPG    +N+ S  I++ LPS +D++V  ME+ + P E Y DIGGL++QI E+ EA+ LP+   E F ++G+
Sbjct:   99 PLIIGTVVDVVDANR---------------------VIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGI 209          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  296 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            P  VGN+ EI++ N                       ++ ++     ++ ++  VD  KL  G  V +N  +  ++  +  E D  V  M+V++ PTE Y+DIGGLE Q+QE+ EAI LP+TH E ++++G+
Sbjct:  105 PLTVGNLEEIIDDNH---------------------AIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGI 215          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  329 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G+
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  329 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G+
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 41/133 (30.83%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  329 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M+V++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G+
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 40/132 (30.30%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  332 MNPEDEA-EEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            + P+DE  EE+ + +D           L+        ++ TS     ++ ++  VD D+L+PG  V +N   + ++  L  + D  V  M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G+
Sbjct:   84 LKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGI 215          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  296 PYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            P LVG + +ILE         DG             VV+K+ST     +     ++ ++LKPG  V +N+ +  I++ LP+  D  V   EV+EKP   Y DIGGL+ QI+E+ EA+ LP+   E F ++G+
Sbjct:   62 PLLVGVVSDILE---------DGR------------VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGI 172          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  437 FLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++ ++  VD D L+PG  V ++  +  I+  L  + D  +  M++D+ PTE Y DIGGLE QIQE+ EA+ LP+TH E ++++G+
Sbjct:  138 YVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGI 222          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  329 EMNP-EDEAEEDGANID-----------LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +M P E++ EE+ + +D           L+        ++ TS     ++ ++  VD D L+PG  V +N   + ++  L  + D  V  M++++ P E Y DIGGL+ QIQE+ E++ LP+TH E ++++G+
Sbjct:   84 QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGI 216          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 47/173 (27.17%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  173 RLLDNEIRVLKEELQRTNLELDSFXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            R L+N+    + E+++   ELD                   P ++G +++++                     K   +++++S      + V   +D  KL PG  V +N+ +  I + +PS  +  V AMEV E    DY+ IGGL++QIQEL EA+ LP+   ERF ++G+
Sbjct:   53 RYLENQKIKYEREIRKLQSELDRMKTS--------------PLIIGTVIDVI---------------------KNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGI 190          
The following BLAST results are available for this feature:
BLAST of FC921594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PSMR_METB62.315e-1330.30Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS4_DICDI2.315e-1331.0626S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS4_RAT3.024e-1330.8326S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE3.024e-1330.8326S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN3.024e-1330.8326S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME3.024e-1330.3026S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_ARCFU3.950e-1334.85Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS4_SCHPO3.950e-1340.0026S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS4_CHICK6.737e-1330.0826S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_METAC8.799e-1327.17Proteasome-activating nucleotidase OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionC32107B06EF RVDevelopN Citrus clementina cDNA clone C32107B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921594 ID=FC921594; Name=FC921594; organism=Citrus clementina; type=EST; length=692bp
GGAACAAGTTGGAGTTTTTAACTTTTGAGCCACACTCTTGTCTCTCTTTT
ATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCATATGGCGACGGCG
ATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGTCTTCCATGACGGC
CGATGATATTGTTCGGGCGTCGCGGCTACTCGACAACGAGATTCGTGTCC
TAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGATTCGTTCAAGGAG
AAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATAAGCAGCTTCCTTA
CTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAACCCAGAGGATGAGG
CTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCAAAGGAAGGGTAAA
TGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCTTTCTTCCAGTAGT
CGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGATCTGGTTGGAGTTA
ATAAGGATAGTTACTTGATCCTGGACACACTGCCTTCTGAGTATGATTCT
CGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTGAAGATTATAATGA
CATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTTGAGGCTATTGTGC
TGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGGGGTTC
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