FC921594

Overview
NameFC921594
Unique NameFC921594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14261 contig Ccv1_Contig14261:2..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 33/95 (34.74%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++ ++T    ++ ++  +D + LKP   V ++K S  ++D LP E DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+
Sbjct:  102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGI 196          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  377 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            LD    GK +++K+ST     +     ++  ++ PG  V +N+ S  +++ LP+  D  V  MEV + P  DY  IGGLE QI EL E + LP+   E FQK+G+
Sbjct:   87 LDVMANGK-MIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGI 190          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 32/95 (33.68%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++++ST     + ++  +D +KLKP   V +++ S  ++D LP E DS +  +  +EKP   Y D+GGL+ Q QE+ EA+ LP+T  + ++++G+
Sbjct:  103 IVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGI 197          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  353 EEDGANIDLDSQRKGKCVVL-KTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +E  +N+ +  ++ GK  VL KT+      + V   V+ D+LK G  V +  DSY +   LP++ D  V  M V++ P   Y  IGGL++QI+E+ E I LP+ H E F+ LG+
Sbjct:  114 QEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGI 227          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            ++ ++T    ++ +V  +D + LKP   V ++K S  ++D LP   DS +  +  D+KP   Y DIGG++ Q QE+ EA+ LP+TH E ++++G+
Sbjct:  102 IVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGI 196          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  458 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +D  ++KP   V +  DSY ++  LP++ D  V  M V++ P   Y  +GGLEKQI+E+ E I LP+ H E F+ LG+
Sbjct:   99 IDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGI 176          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  458 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            +D  KL P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E F+ LG+
Sbjct:  115 IDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI 192          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  467 DKLKPGDL-----VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            DKL P D+     VGV+++ Y I   LP + D+ V  M+V+EKP   Y D+GG ++QI++L E + +P+ H E+F  LG+
Sbjct:  122 DKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGI 201          
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  467 DKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691
            D L+ GD V +N DS+ +   L  E D+R +AMEVDE P+  Y DIGGL+ Q++E+ EA+  P+ + E+F  +GV
Sbjct:  110 DTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGV 183          
The following BLAST results are available for this feature:
BLAST of FC921594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
PRS6B_BOVIN2.560e-1234.7426S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR_UNCMA3.343e-1237.14Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS6B_ASPNG5.703e-1233.6826S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS8_ENCCU7.448e-1236.8426S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS6B_MOUSE7.448e-1234.7426S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS8_SCHPO6.305e-1141.0326S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8B_ARATH6.305e-1142.3126S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS7_DICDI6.305e-1141.2526S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR1_HALSA8.235e-1145.33Proteasome-activating nucleotidase 1 OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionC32107B06EF RVDevelopN Citrus clementina cDNA clone C32107B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921594 ID=FC921594; Name=FC921594; organism=Citrus clementina; type=EST; length=692bp
GGAACAAGTTGGAGTTTTTAACTTTTGAGCCACACTCTTGTCTCTCTTTT
ATTTTCTCGGTGCAAATTTTGTGTGAAAAAATAATCATATGGCGACGGCG
ATGGTGGAAGATCCCAACTTGGAAGACGATCAACTGTCTTCCATGACGGC
CGATGATATTGTTCGGGCGTCGCGGCTACTCGACAACGAGATTCGTGTCC
TAAAGGAAGAATTACAAAGAACAAATCTTGAGTTAGATTCGTTCAAGGAG
AAGATTAAGGAGAATCAAGAGAAGATTAAACTCAATAAGCAGCTTCCTTA
CTTGGTGGGCAACATCGTTGAGATTTTGGAGATGAACCCAGAGGATGAGG
CTGAGGAAGATGGTGCTAACATTGATCTTGACTCGCAAAGGAAGGGTAAA
TGTGTAGTGTTGAAGACTTCTACTCGTCAGACCATCTTTCTTCCAGTAGT
CGGGCTTGTTGATCCTGATAAGTTGAAACCCGGTGATCTGGTTGGAGTTA
ATAAGGATAGTTACTTGATCCTGGACACACTGCCTTCTGAGTATGATTCT
CGGGTGAAGGCAATGGAAGTTGATGAGAAACCTACTGAAGATTATAATGA
CATTGGAGGGTTGGAGAAGCAGATACAAGAACTTGTTGAGGCTATTGTGC
TGCCAATGACACACAAAGAGCGTTTCCAGAAGTTGGGGGTTC
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