FC921594
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12 Identity = 33/95 (34.74%), Postives = 60/95 (63.16%), Query Frame = 2 Query: 407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 ++ ++T ++ ++ +D + LKP V ++K S ++D LP E DS + + D+KP Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ Sbjct: 102 IVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGI 196
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 2 Query: 377 LDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 LD GK +++K+ST + ++ ++ PG V +N+ S +++ LP+ D V MEV + P DY IGGLE QI EL E + LP+ E FQK+G+ Sbjct: 87 LDVMANGK-MIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGI 190
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12 Identity = 32/95 (33.68%), Postives = 60/95 (63.16%), Query Frame = 2 Query: 407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 ++++ST + ++ +D +KLKP V +++ S ++D LP E DS + + +EKP Y D+GGL+ Q QE+ EA+ LP+T + ++++G+ Sbjct: 103 IVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGI 197
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12 Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 2 Query: 353 EEDGANIDLDSQRKGKCVVL-KTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 +E +N+ + ++ GK VL KT+ + V V+ D+LK G V + DSY + LP++ D V M V++ P Y IGGL++QI+E+ E I LP+ H E F+ LG+ Sbjct: 114 QEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGI 227
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12 Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 407 VLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 ++ ++T ++ +V +D + LKP V ++K S ++D LP DS + + D+KP Y DIGG++ Q QE+ EA+ LP+TH E ++++G+ Sbjct: 102 IVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGI 196
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 458 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 +D ++KP V + DSY ++ LP++ D V M V++ P Y +GGLEKQI+E+ E I LP+ H E F+ LG+ Sbjct: 99 IDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGI 176
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11 Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 2 Query: 458 VDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 +D KL P V + DSY++ LPS+ D V M+V++ P Y+ IGGL++QI+E+ E I LP+ H E F+ LG+ Sbjct: 115 IDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI 192
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11 Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 467 DKLKPGDL-----VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 DKL P D+ VGV+++ Y I LP + D+ V M+V+EKP Y D+GG ++QI++L E + +P+ H E+F LG+ Sbjct: 122 DKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGI 201
BLAST of FC921594 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11 Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2 Query: 467 DKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGV 691 D L+ GD V +N DS+ + L E D+R +AMEVDE P+ Y DIGGL+ Q++E+ EA+ P+ + E+F +GV Sbjct: 110 DTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGV 183 The following BLAST results are available for this feature:
BLAST of FC921594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921594 ID=FC921594; Name=FC921594; organism=Citrus clementina; type=EST; length=692bpback to top |