FC923211
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM12_ARATH (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.868e-34 Identity = 69/85 (81.18%), Postives = 76/85 (89.41%), Query Frame = 2 Query: 170 CDSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 CDSVK+H V++ S+ L MKDLLSWV TNLIKERPEMFMKGD+VRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG Sbjct: 15 CDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM11_ARATH (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana GN=URM1-1 PE=3 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 2.056e-32 Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = 2 Query: 170 CDSVKVHNVDVVPPKG--SEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 CDS K+H V+V P G S+ MK LLSWV TNLIKERPEMFMKGD+VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG Sbjct: 15 CDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_ORYSJ (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica GN=URM1 PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31 Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 2 Query: 176 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 S KVH VD+ P G K++MK LL+WV +NLIKERPEMF+KGDSVRPGVLVL+NDCDWEL G LD LEEKDVVVFISTLHGG Sbjct: 18 STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_ORYSI (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica GN=URM1 PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31 Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 2 Query: 176 SVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 S KVH VD+ P G K++MK LL+WV +NLIKERPEMF+KGDSVRPGVLVL+NDCDWEL G LD LEEKDVVVFISTLHGG Sbjct: 18 STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_MAIZE (Ubiquitin-related modifier 1 homolog OS=Zea mays GN=URM1 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29 Identity = 64/85 (75.29%), Postives = 69/85 (81.18%), Query Frame = 2 Query: 173 DSVKVHNVDVVPPK-GSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 +S KVH V+V PK G K+ MK LLSWV NLIKERPEMF+K DSVRPGVLVL+NDCDWEL G LD LEEKDVVVFISTLHGG Sbjct: 17 NSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_CHICK (Ubiquitin-related modifier 1 homolog OS=Gallus gallus GN=URM1 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.250e-21 Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 D VK H V + P E +++LL W+ NL+KERPE+FM+G+SVRPG+LVL+ND DWEL G+LD L+++D V+FISTLHGG Sbjct: 20 DGVKKHQVTL--PSQPEPWDIRNLLKWIKQNLLKERPELFMQGESVRPGILVLINDADWELMGELDYKLQDQDNVLFISTLHGG 101
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_CAPHI (Ubiquitin-related modifier 1 homolog OS=Capra hircus GN=URM1 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.785e-21 Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 2 Query: 173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 D VK H V + P E ++ LL W+ NL+KERPE+F++GDSVRPG+LVLVND DWEL G+LD L+++D V+FISTLHGG Sbjct: 20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG 101
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_BOVIN (Ubiquitin-related modifier 1 homolog OS=Bos taurus GN=URM1 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.785e-21 Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 2 Query: 173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 D VK H V + P E ++ LL W+ NL+KERPE+F++GDSVRPG+LVLVND DWEL G+LD L+++D V+FISTLHGG Sbjct: 20 DGVKKHQVTL--PGQEEPWDIRSLLVWIKKNLLKERPELFIQGDSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLHGG 101
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_HUMAN (Ubiquitin-related modifier 1 homolog OS=Homo sapiens GN=URM1 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.637e-21 Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 D +K H V + P E +++LL W+ NL+KERPE+F++GDSVRPG+LVL+ND DWEL G+LD L+++D V+FISTLHGG Sbjct: 20 DGIKKHRVTL--PGQEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101
BLAST of FC923211 vs. ExPASy Swiss-Prot
Match: URM1_MOUSE (Ubiquitin-related modifier 1 homolog OS=Mus musculus GN=Urm1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21 Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 173 DSVKVHNVDVVPPKGSEKLIMKDLLSWVGTNLIKERPEMFMKGDSVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 424 D VK H V + P E +++LL W+ NL+KERPE+F++GDSVRPG+LVL+ND DWEL G+LD L+++D ++FISTLHGG Sbjct: 20 DGVKKHQVAL--PGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLHGG 101 The following BLAST results are available for this feature:
BLAST of FC923211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923211 ID=FC923211; Name=FC923211; organism=Citrus clementina; type=EST; length=580bpback to top |