FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3375 contig Ccv1_Contig3375:200..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  213 FAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            FA  +++  N +      E +  +   R +  S +   +  G + + ++ +KN YRG+RQRPWGK+AAEIRDP++  RVWLGTF TAE+AARAYD+ A   RG +AK+NFP
Sbjct:   87 FAPNQRIEKNHQQ-----EEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.497e-21
Identity = 56/102 (54.90%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  327 SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPS 632
            S SGD+  P+R+    YRG+RQRPWGKWAAEIRDP K  RVWLGTF+ AE AARAYD+ A + RG KAK+NFP  E+V  V P               PT S
Sbjct:  175 SFSGDQ--PRRR----YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP--ENVKLVRPASTEAQPVHQTAAQRPTQS 268          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  216 AATKQLPHNFESTPFSDEHQSLAKIKR-PQPPSYLNSCSASGDEKKPKRQ-----RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 572
            +A  Q+  N  S+  +++HQ +   ++ P PP+             P  Q     RK  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAE AA AYD  A K +G KAK+NFP    + + T
Sbjct:   46 SALTQVIGNQSSSHDNNQHQPVVYNQQDPNPPA-------------PPTQDQGLLRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNT 157          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.489e-21
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 3
Query:  363 RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            R+  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAE AA AYD+ A K +G KAK+NFP
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  156 FPRHGGSRV----TASDLWPNSPFAATKQLPHNFEST---------PFSDEHQSLAKIKRPQPPSYLNSCS-ASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            FP H  +      + S  +P+S F +  Q P N++S             D +  +     P  P ++     +SG   KP +    LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD+ A K+RG  A++NFP
Sbjct:   61 FPSHSTTSYPDIYSGSMTYPSS-FGSDLQQPENYQSQFHYQNTITYTHQDNNTCMLNFIEPSQPGFMTQPGPSSGSVSKPAK----LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  210 PFAATKQLPHNF--ESTPFSDEHQSL---AKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 572
            P   T QL HNF  E+ P +  +QS    + + + +PP    S S +   K  K + +  YRG+R+RPWGK+AAEIRDP +KG R+WLGT++TA EA RAYD+ A ++RG+KA +NFP +  V + T
Sbjct:   29 PSLFTNQL-HNFHSETGPRTITNQSPKPNSTLNQRKPPLPNLSVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSET 154          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 3
Query:  360 QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 557
            + K  YRG+R RPWGK+AAEIRDP R+G RVWLGTF TA EAARAYDKEA ++RG KA +NFP E D
Sbjct:  132 EEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVD 198          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 57/121 (47.11%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  261 SDEHQSLAKIKRPQPPSYLN-----------------------SCSA--SGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            S  HQ  ++I  P PP++ N                       SC A  SG   KP +    LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYDK A K+RG  A++NFPN
Sbjct:   93 SQIHQIQSQIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTK----LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPN 209          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  366 KNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            K  YRG+RQRPWGK+AAEIRDP RKG RVWLGTF+TA EAA+AYD+ A K+RG KA VNFP E
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  366 KNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            K  YRG+RQRPWGK+AAEIRDP RKG RVWLGTF+TA EAA+AYD+ A K+RG KA VNFP E
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
EF109_ARATH2.497e-2145.05Ethylene-responsive transcription factor ERF109 OS... [more]
ABR1_ARATH2.497e-2154.90Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF115_ARATH5.563e-2145.60Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH9.489e-2172.13Ethylene-responsive transcription factor ERF114 OS... [more]
ERF55_ARATH2.761e-2040.28Ethylene-responsive transcription factor ERF055 OS... [more]
EF104_ARATH4.709e-2045.67Ethylene-responsive transcription factor ERF104 OS... [more]
EF103_ARATH8.033e-2070.15Ethylene-responsive transcription factor 6 OS=Arab... [more]
RAP24_ARATH1.049e-1947.11Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF5_NICSY1.370e-1974.60Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_TOBAC1.789e-1974.60Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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