FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  333 SGDEKKPKRQRKNL---YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            SG+  K +   K +   YRG+R+R WGKW +EIR+P    R+WLG+F T E AA AYD  A   RG++A++NFP
Sbjct:    7 SGNSDKAQNDGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFP 80          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  318 NSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            +S S S    +  + +   Y+G+R R WG W  EIR P +  R+WLG+++TAE AARAYD     ++G KA +NFPN
Sbjct:   24 SSSSTSALRHQSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPN 100          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            Y+GIR R WGKW AEIR+P K  R+WLG++ T E AARAYD     +RG  A++NFP
Sbjct:   28 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFP 84          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 44/102 (43.14%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  267 EHQSLAKIKRPQPPSYLNSCSASGDEKKPKR-QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN----EED 557
            E +     KR QPP           E+ P     +  YRGIR+R WGKW AEIR+P K  R+WLG++ T   AARAYD     +RG  A++NFP+    EED
Sbjct:    4 EQEESTMRKRRQPPQ----------EEVPNHVATRKPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEED 95          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF70_ARATH (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  345 KKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGV-----RVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF----PNEED 557
            K  K ++K  YRG+RQRPWGKW AEIR  R        R+WLGTFNTAEEAA AYD  + K+ G  A  NF     N+ED
Sbjct:   71 KTAKTEKK--YRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTNFGLPAENQED 148          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  339 DEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 569
            +EKK     ++ Y+G+R+R WGKW +EIR P    R+WLG+++T E+AARA+D     +RG  A  NFPN     +V
Sbjct:    9 EEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISV 85          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF69_ARATH (Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  303 PPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPR---KGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            P S L + + + ++KK        +RG+RQRPWGKWAAEIR  R   +  R+WLGTF TAEEAA AYD  A ++ G  A  NF
Sbjct:   59 PASLLAARNTTANKKK--------FRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIGPDAPTNF 133          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana GN=DREB2E PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  267 EHQSLAKIKRPQPPSYLNSCS-ASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP--------RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            E + LA+ +R Q       C    G  + P  +    +RG+RQR WGKW AEIR+P         +  R+WLGTF TA EAA AYD+ A  + G  A++NFP +
Sbjct:   37 EEEGLARARRVQAKGSKKGCMRGKGGPENPVCR----FRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPED 136          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  363 RKNLYRGIRQRP-WGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            R  LYRG+RQR    KW +EIR+PRK  R+WLGTF+T E AA AYD  A  ++G +A++NFPN
Sbjct:   11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPN 73          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFT 566
            Y+G+R+R WGKW +EIR P    R+WLG+++T E+AARA+D     +RG  AK NFP+   V +
Sbjct:   12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVIS 75          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ERF21_ARATH8.602e-1448.65Ethylene-responsive transcription factor ERF021 OS... [more]
ERF13_ARATH8.602e-1444.16Ethylene-responsive transcription factor ERF013 OS... [more]
ERF08_ARATH8.602e-1457.89Ethylene-responsive transcription factor ERF008 OS... [more]
RAP21_ARATH1.123e-1343.14Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF70_ARATH1.467e-1353.75Ethylene-responsive transcription factor ERF070 OS... [more]
ERF18_ARATH1.467e-1344.16Ethylene-responsive transcription factor ERF018 OS... [more]
ERF69_ARATH4.269e-1349.40Ethylene-responsive transcription factor ERF069 OS... [more]
DRE2E_ARATH4.269e-1340.38Dehydration-responsive element-binding protein 2E ... [more]
ERF24_ARATH7.282e-1357.14Ethylene-responsive transcription factor ERF024 OS... [more]
ERF17_ARATH7.282e-1348.44Ethylene-responsive transcription factor ERF017 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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