FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3375 contig Ccv1_Contig3375:200..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  174 SRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPK---RQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            S V+ SD      F  + Q  + FE    S   +   KI  P    ++   + +   +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+TA EAARAYD+ A ++RG KA +NFP E
Sbjct:   90 SEVSVSDF----DFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 569
            +RG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR+ RG KAK NFP   +  TV
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTV 97          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR  RG KAK NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  270 HQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            H + + + + +PP    +   +    +   QR   YRG+R+RPWGK+AAEIRDP +KGVRVWLGTF+TA EAAR YDK A K+RG KA +NFP E
Sbjct:   39 HCTTSTLSQRKPPLATIAVPTTAPVVQENDQRH--YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP+
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPS 84          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  234 PHNFESTPFSDEHQS---LAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 557
            P  F ST   D HQ+   + +     P +   +  A+G   K    +K LYRG+RQR WGKW AEIR P+  +RVWLGT++TAE AA AYD+ A K+RG+ A++NFPN +D
Sbjct:   92 PPLFSST--YDHHQTSELMLQAAAGSPAAAFAAALAAGRVTK----KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKD 196          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.800e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 62/173 (35.84%), Postives = 87/173 (50.29%), Query Frame = 3
Query:  246 ESTPFSDEH--QSLAKIKRPQPP-SYLNSCSASGDEKKPKRQ------RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP---NEEDVFTVTPXXXXXXXXXXXXXXNPTP-SPLPSLSQEDLFSRNNSSISSVGFDLYGYDLN 725
            ++T  SD+    ++ ++KR     + + S  + GD K+          R+  +RG+RQRPWG+WAAEIRDP +G RVWLGT++T EEAA  YDK A K++G  A  NFP     E   TVT               N    SP   L   D    +N     V  D +G+D++
Sbjct:   46 DATDSSDDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDNLGFCEV--DAFGFDVD 216          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  153 FFPRHGGSRVTASDLWPNSPFAATKQ----LPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            +F     S V  +D W + P +        + +       S    S+  +  P   +   +  ASG      RQ+   YRG+R+RPWGK+AAEIRDP+K G RVWLGT+ T E+AA AYD+ A ++RG KAK+NFP+
Sbjct:   16 YFRNPSFSNVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAP--RQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 150          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.881e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3
Query:  372 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD+EA K+RG+ A++NFP
Sbjct:  186 LYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
EF102_ARATH1.789e-1944.62Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF80_ARATH3.052e-1967.69Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF78_ARATH3.052e-1975.44Ethylene-responsive transcription factor 4 OS=Arab... [more]
EF105_ARATH3.052e-1952.63Ethylene-responsive transcription factor ERF105 OS... [more]
ERF4_TOBAC5.207e-1972.41Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF61_ARATH6.800e-1946.85Ethylene-responsive transcription factor ERF061 OS... [more]
ERF4_NICSY6.800e-1973.68Ethylene-responsive transcription factor 4 OS=Nico... [more]
PTI6_SOLLC8.881e-1935.84Pathogenesis-related genes transcriptional activat... [more]
ERF99_ARATH8.881e-1939.42Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF53_ARATH8.881e-1970.69Ethylene-responsive transcription factor ERF053 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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