FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  189 SDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDE-------KKPKR-QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            S LW   PF    +L     S+P  D    + +I + +  S  +S + +  E       KK KR +    YRG+R+RPWGK+AAEIRDP +KG R+WLGTF +  +AARAYD  A K+RG+KA +NFP
Sbjct:   40 SGLWSLEPFNPVPKLE---PSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            +RG+R+RPWG++AAEIRDP K  RVWLGTF++AEEAARAYD  AR +RG KAK NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  201 PNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKK----PKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            PN+ F   K +P           HQ   ++   +  S +++ S +    K       + KNLYRG+RQR WGKW AEIR P+   R+WLGTF TAE+AA AYD+ A ++RG  AK+NFPN
Sbjct:   11 PNTSFGVNKSMPLGLNQLTPYQIHQIQNQLNHRR--STISNLSPNRIRMKNLTPSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPN 128          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  327 SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            +A G  K+P+      YRG+R+RPWG++AAEIRDP K  RVWLGTF++A +AARAYD  AR +RG KAK NFP
Sbjct:   17 TAGGSVKEPR------YRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T EEAARAYDK A + RG KAK NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.978e-18
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  234 PHNFESTPFSDE-HQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            P N  ST    E  + +     P P     + + +     PK +    YRG+RQRPWGK+AAEIRDP K G RVWLGT+ TAEEAA AYDK A ++RG KA +NFP+
Sbjct:   58 PFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRH---YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 161          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFT 566
            YRG+R+RPWGK+AAEIRD RK G RVWLGTF+TAE+AARAYD+ A  +RGK A +NFP+E ++ T
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEYNMGT 84          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 61/136 (44.85%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  261 SDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF--PNEEDVFTVTPXXXXXXXXXXXXXXNPTPSPLPSLSQEDL 662
            SDE QS A  +  Q P+  N  S SG  KK        +RG+RQRPWGKWAAEIRDP +  R+WLGTF TAEEAA  YD  A ++RG  A  NF  P +E+     P               PT S   S ++EDL
Sbjct:   99 SDETQSPASSR--QRPN--NKVSVSGQIKK--------FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEEEEEEEPEPVIEEKPVIMTTPTPTTSSSES-TEEDL 221          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  327 SASGDEKKP--KRQRKNL-------------YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            S   D++KP  K+++K +             +RG+RQRPWGKWAAEIRDP + VRVWLGTF+TAEEAA  YD  A ++RG  A++NFP
Sbjct:   56 SVVSDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ TAEEAA AYDK A ++RG KA +NFP+
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 157          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
EF107_ARATH1.160e-1843.75Ethylene-responsive transcription factor ERF107 OS... [more]
ERF82_ARATH1.515e-1871.93Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF56_ARATH1.515e-1842.50Ethylene-responsive transcription factor ERF056 OS... [more]
ERF83_ARATH1.978e-1860.27Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF76_ARATH1.978e-1873.68Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF2_NICSY1.978e-1848.60Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF97_ARATH2.584e-1867.69Ethylene-responsive transcription factor 14 OS=Ara... [more]
CRF3_ARATH2.584e-1844.85Ethylene-responsive transcription factor CRF3 OS=A... [more]
CRF1_ARATH2.584e-1852.27Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF2_TOBAC3.375e-1872.88Ethylene-responsive transcription factor 2 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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