FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  354 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            ++ ++  YRG+R+RPWG++AAEIRDP K  RVWLG+FNT EEAARAYD  A + RG KA  NFP
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+T EEAA AYD  AR +RG KAK NFP+
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPS 69          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 3
Query:  372 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            LYRG+RQR WGKW AEIR P+   R+WLGTF TA+EAA AYD+ A KIRG  A++NFP+
Sbjct:  110 LYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPD 168          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            YRG+R+RPWGK+AAEIRD  R G RVWLGTF TAEEAA AYD+ A ++RG KA +NFP+E
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  309 SYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            S + SC   G E      R  +Y G+R+R WGKW +EIR+PRK  R+WLG+F   E AA+AYD  A  ++G+KA++NFP E
Sbjct:   23 SAVKSCGGGGKETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEE 103          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  210 PFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKR----QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVN 539
            P A+  Q  H        D +Q+L     PQ  S  +S ++S   K+  +      K  YRG+RQR WGKW AEIR+PRK  R WLGTF TAE+AARAYD+ A  + G +A++N
Sbjct:    3 PLASQHQHNH------LEDNNQTLTH-NNPQSDSTTDSSTSSAQRKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLN 109          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T EEAA AYDK A ++RG KA +NFP+
Sbjct:  105 YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPH 163          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  342 EKKPKRQ--------RKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            E+KPK+         +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD  A ++RG +A +NFP
Sbjct:   98 EEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 46/84 (54.76%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  291 KRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            KR    S +   S SG  +K        YRG+RQRPWGKWAAEIRDP +  R+WLGTF TAEEAA  YD  A K+RG  A  NF
Sbjct:   96 KRINVDSTVQKPSVSGQNQKK-------YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:  366 KNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            + LYRG+RQR WGKW AEIR P+   R+WLGTF+TAEEAA AYD  A K+RG+ A++NFP
Sbjct:   90 QKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ERF77_ARATH1.282e-1762.50Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF81_ARATH1.675e-1770.69Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF57_ARATH2.187e-1766.10Ethylene-responsive transcription factor ERF057 OS... [more]
PTI5_SOLLC2.857e-1770.00Pathogenesis-related genes transcriptional activat... [more]
ERF23_ARATH3.731e-1748.15Ethylene-responsive transcription factor ERF023 OS... [more]
ABI4_ARATH3.731e-1743.86Ethylene-responsive transcription factor ABI4 OS=A... [more]
ERF1_TOBAC4.873e-1769.49Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF101_ARATH4.873e-1758.44Ethylene-responsive transcription factor 2 OS=Arab... [more]
CRF4_ARATH4.873e-1754.76Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF60_ARATH6.365e-1765.00Ethylene-responsive transcription factor ERF060 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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