FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  261 SDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            S  H+S   ++ P P     S     ++K   +Q    +RG+R R WGKW +EIR+PRK  R+WLGTF+T E AARA+D  A  I+G  A +NFP
Sbjct:    4 SSSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPN--FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFP 96          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  330 ASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            +S D++K +  ++ +YRG+R R WGKW +EIR+PRK  R+WLGTF TAE A RA+D  A  I+G  A +NFP
Sbjct:    4 SSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFP 75          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  288 IKRPQPPSYLNSCSASGDEKKPKRQRKN----LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVF 563
            +   +  S  +   A   EKK KR R +    +YRG+R R WGKW +EIR+PRK  R+WLGTF T E AARA+D  A  I+G  A +NFP   D F
Sbjct:   18 VPNSESDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSF 113          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ +AEEAA AY K A ++RG KA +NFP+
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPH 165          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 3
Query:  315 LNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRG-KKAKVNFPNE 551
            ++SCS S       R+    YRG+R+RPWGK+AAEIRD  R GVRVWLGTF TAEEAA AYDK A +IRG +KA  NF  E
Sbjct:   94 IDSCSLSSRVSCKTRK----YRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 53/123 (43.09%), Postives = 68/123 (55.28%), Query Frame = 3
Query:  195 LWPNSPFAATKQLPHNF--ESTPFSDEHQSLAKIKRPQPPSYLNS-CSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            LW  S F      P  F   +  +SD+  S    +        N   S S +E+K     +  YRG+R+RPWGK+AAEIRD  R G+RVWLGTF+ AEEAA AYD+ A   +G  A +NFP E
Sbjct:   23 LWNESCFLDQSSEPQAFFCPNYDYSDDFFSFESPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVE 145          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  204 NSPFAATKQLPHNFESTPF----SDEHQSLAKIKRPQPPSYLNSCSASGDEKK-PKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 551
            +SP + +    +N+ S PF    S+E      I++    +Y++S S     K    R+ +  YRG+R+RPWGK+AAEIRD  R G+RVWLGTF +AEEAA AYD+ A  +RG  A +NF  E
Sbjct:   21 SSPDSFSSSSSNNY-SLPFNENDSEEMFLYGLIEQSTQQTYIDSDSQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 3
Query:  315 LNSCSASGDE----KKPKRQRKNL----YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            LNS S++ +     KK +R  + +    YRG+R+RPWGK+AAEIRDP +KG R+WLGTF +  +AARAYD  A K+RG+KA +NFP
Sbjct:   82 LNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 46/94 (48.94%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPXXXXXXXXXXXXXXNPTPS-PLPSLSQ 653
            YRG+R+RPWG++AAEIRDP    R WLGTF+TAE+AA AYD  AR  RG KA+ NF     V    P               P PS PL S +Q
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEPRFSFSNKKSSPSARCPLPSLPLDSSTQ 150          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVN 539
            +RG+RQR WGKW AEIR+P +G R+WLGTFNT+ EAA AYD+ A+K+ G +AK+N
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ERF39_ARATH6.365e-1744.21Ethylene-responsive transcription factor ERF039 OS... [more]
ERF43_ARATH8.312e-1752.78Ethylene-responsive transcription factor ERF043 OS... [more]
DREB3_ARATH8.312e-1746.88Dehydration-responsive element-binding protein 3 O... [more]
ERF1_SOLLC1.086e-1669.49Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF91_ARATH1.418e-1660.49Ethylene-responsive transcription factor ERF091 OS... [more]
ERF93_ARATH3.159e-1643.09Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF92_ARATH3.159e-1643.44Ethylene-responsive transcription factor 1B OS=Ara... [more]
EF106_ARATH3.159e-1653.49Ethylene-responsive transcription factor ERF106 OS... [more]
ESR1_ARATH4.125e-1648.94Ethylene-responsive transcription factor ESR1 OS=A... [more]
DRE2G_ARATH4.125e-1663.64Dehydration-responsive element-binding protein 2G ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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