FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            Y+G+RQR WGKW AEIR+P +G R+WLGTF+T+ EAA AYD  ARK+ G +A +N P
Sbjct:   42 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLP 98          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  372 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            LYRG+RQR WGKW AEIR PR   RVWLGTF TAE+AA AYD  A  +RG+ A +NFP+
Sbjct:  231 LYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPD 289          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  348 KPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            KPK+     YRG+RQRPWGK+AAEIRDP    R+WLGTF TAEEAA AYD+ A  ++G KA  NF
Sbjct:  101 KPKK-----YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  360 QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            Q+   + G+R+RPWG+W+AEIRD     R WLGTF+TAEEAARAYD  AR++RG KAK NF
Sbjct:  111 QKTGGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNF 171          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEE 554
            +RG+RQR WGKW AEIR+P +G R+WLGTF TA+EAA AYD+ A+ + G  A++NFP  +
Sbjct:   79 FRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPRSD 138          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  327 SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            ++S  +KK   Q    + G+R+RPWG++AAEIRDP    R WLGTF+TAEEAA AYD+ AR +RG +A+ NF
Sbjct:    4 TSSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  360 QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            + +  YRG+R+RPWGK+AAEIRD  RKG+RVWLGTF+TAE AA AYD+ A  ++G  A +NFP
Sbjct:   77 EEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 54/132 (40.91%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  174 SRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKP--KRQRKN------LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            S +TAS    +SP   T     +  ++ F +E  S  K  R +  S L S     D+     KR++ N       YRG+R R WGKW +EIR+PRK  R+WLGT+ TAE AARA+D  A  I+G  A +NFP
Sbjct:   28 SSITASASLSSSP--TTSSSSSSSTNSNFIEEDNSKRKASR-RSLSSLVSVEDDDDQNGGGGKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFP 156          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  264 DEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            DE +   K K+  P +   +    GD  K   +    YRG+RQRPWGK+AAEIRDP    R+WLGTF TAEEAA  YD+ A +I+G  A+ NF
Sbjct:   69 DEPKPARKAKKKSPAA---AAENGGDLVKSVVK----YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            YRG+RQR WGKW AEIR+P+K  R+WLG+F TAEEAA AYD+ A K+ G  A +N P+
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPH 85          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
DRE2D_ARATH4.125e-1661.40Dehydration-responsive element-binding protein 2D ... [more]
ERF62_ARATH5.388e-1666.10Ethylene-responsive transcription factor ERF062 OS... [more]
CRF6_ARATH5.388e-1663.08Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF84_ARATH7.037e-1662.30Ethylene-responsive transcription factor ERF084 OS... [more]
DRE2A_ARATH9.190e-1658.33Dehydration-responsive element-binding protein 2A ... [more]
LEP_ARATH1.200e-1554.17Ethylene-responsive transcription factor LEP OS=Ar... [more]
ERF94_ARATH1.200e-1561.90Ethylene-responsive transcription factor ERF094 OS... [more]
ERF34_ARATH1.568e-1540.91Ethylene-responsive transcription factor ERF034 OS... [more]
CRF5_ARATH1.568e-1548.39Ethylene-responsive transcription factor CRF5 OS=A... [more]
DRE2F_ARATH2.047e-1562.07Dehydration-responsive element-binding protein 2F ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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