FC925066

Overview
NameFC925066
Unique NameFC925066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  339 DEKKPKRQ--RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            ++KKP +   +  +YRG+R+R WGKW +EIR+PRK  R+WLGTF + E AARA+D  A  I+G  A +NFP+
Sbjct:   22 EKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPD 93          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 3
Query:  339 DEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            D++K   +  N +RG+R R WGKW +EIR+P+K  R+WLGTF+TAE AARA+D  A  I+G  A +NFP
Sbjct:   34 DDEKVVSKHPN-FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFP 101          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            YRG+R R WGKW +EIR+PRK  R+WLGTF+T E AARA+D  A  I+G  A +NFP
Sbjct:   43 YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFP 99          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  306 PSYLNSCSAS-GDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            P+   SC       KK +  R  +YRG+RQR  GKW +E+R+P K  R+WLGTF TAE AARA+D  A  +RG+ A +NF
Sbjct:   24 PTLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  249 STPFSDEHQSLAKIKRPQPPSYLNSCSAS-GDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 542
            S  F  +++S         P+  +SC       KK +  R  +YRG+R+R  GKW  E+R+P K  R+WLGTF TAE AARA+D  A  +RG+ A +NF
Sbjct:    8 SEMFGSDYESSVSSGGDYIPTLASSCPKKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 106          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            +RG+RQR WG W AEIR P    R+WLGTF TAEEAARAYD+ A  + G+ AK NFP
Sbjct:    7 FRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFP 63          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  345 KKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 548
            K+  +  K  + G+RQRP GKW AEI+D  + +R+WLGTF TAEEAARAYD+ A  +RG   + NF N
Sbjct:   12 KEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFAN 79          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            YRG+RQR WGKW AEIR+P  G R+WLGTF+++ EAA AYD+ A+ I G+ A++N P
Sbjct:   72 YRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLP 128          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  327 SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 545
            + S D K P       YRG+R R WGKW +EIR+PRK  R+WLGT+ TAE AARA+D  A  I+G    +NFP
Sbjct:   60 NVSDDNKNPTS-----YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFP 127          
BLAST of FC925066 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 3
Query:  375 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVF 563
            YRGIR+R WGKW +EIR+P K  R+WLG++ TAE AA AYD  A  +RG+   +NFP   D F
Sbjct:   20 YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSF 82          
The following BLAST results are available for this feature:
BLAST of FC925066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
TINY_ARATH7.780e-1551.39Ethylene-responsive transcription factor TINY OS=A... [more]
ERF38_ARATH7.780e-1553.62Ethylene-responsive transcription factor ERF038 OS... [more]
ERF37_ARATH7.780e-1561.40Ethylene-responsive transcription factor ERF037 OS... [more]
DRE1B_ARATH7.780e-1548.75Dehydration-responsive element-binding protein 1B ... [more]
DRE1A_ARATH7.780e-1541.41Dehydration-responsive element-binding protein 1A ... [more]
WIN1_ARATH1.016e-1463.16Ethylene-responsive transcription factor WIN1 OS=A... [more]
RA211_ARATH1.016e-1452.94Ethylene-responsive transcription factor RAP2-11 O... [more]
DRE2C_ARATH1.016e-1459.65Dehydration-responsive element-binding protein 2C ... [more]
ERF35_ARATH1.327e-1452.05Ethylene-responsive transcription factor ERF035 OS... [more]
ERF22_ARATH1.327e-1455.56Ethylene-responsive transcription factor ERF022 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA24FM1 TF Citrus clementina cDNA clone KN0AAP3YA24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925066 ID=FC925066; Name=FC925066; organism=Citrus clementina; type=EST; length=726bp
TTAATTCGTAAATCCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTAATA
ATCGCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTT
ATTATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAG
ACTTCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGG
CCCAACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATC
TACTCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTC
AACCCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAG
CCCAAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTG
GGGCAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCT
GGCTCGGCACATTCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAA
GAAGCCCGCAAGATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGA
AGAGGACGTCTTCACCGTCACCCCTGCTGCTGCCGCCCATGCTTACCATC
ATCATCAGCATAATCATAATCCCACTCCCAGTCCCCTTCCTTCTCTTTCC
CAAGAAGATCTTTTTAGTCGTAATAACTCATCTATAAGTAGTGTTGGTTT
TGACTTGTATGGGTATGATCTGAACC
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