FC925447

Overview
NameFC925447
Unique NameFC925447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14167 contig Ccv1_Contig14167:234..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEEL (RAG1-activating protein 1 homolog OS=Caenorhabditis elegans GN=K02D7.5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 48/205 (23.41%), Postives = 92/205 (44.88%), Query Frame = 1
Query:   22 VPTFYRIYRKKSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHFLATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIYKNANKVIIEEKKLPEAQLKS 636
            +P   +I R+ +      +P+L+ +     W  Y L+K + ++++ +N  G      Y + F+ Y+      +   + V+  +G   L + L          +  LG IC+  ++  F APL+ +  V++ + V  +P  +     L +  W  YG    DI + +PN +G  L + Q+ L+V+       I E +K P  +L S
Sbjct:   25 IPICMQIRRQGAVGDISGVPFLMGVLGGSFWLRYGLLKMD-YVMIIVNVVGVACMAFYCVFFLIYSLPKKTFTCQLILVTSTIGGMVLWIAL-------KPNLDYLGVICMTFNIMNFGAPLAGLGVVLKNREVSTLPLPMCVANFLVSSQWCLYGNLVSDIYIIIPNGIGMFLAIVQLALFVVLP-----IRENEKSPLEKLAS 216          
BLAST of FC925447 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 47/178 (26.40%), Postives = 92/178 (51.69%), Query Frame = 1
Query:   52 KSTESFQSLPYLVALFSSMLWFYYALVKQNAFLLVTINCFGCVIETIYIILFITYAPKGSRNSTVKLFVSMNVGVFSLILLLTHF---LATDSTRILILGWICVAVSVSVFAAPLSIVAQVIRTKSVEFMPFILSFFLTLSAIMWFAYGLFQKDICVALPNIVGFLLGLTQMLLYVIY 576
            +S ++ Q LP+L    +++ W  Y  +K +  L+V +N  G  ++T+YI+ ++ Y P   R   V L  +  +GV  L+L   +F   +     R+ +LG  C   ++S++ +PL+ +A+VI+TKS + + + L+    L++  W  YG   +   + + N  G +    +  L+  Y
Sbjct:   37 RSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCP---RKRVVLLQTATLLGV--LLLGYGYFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYGFRLRVPYIMVSNFPGIVTSFIRFWLFWKY 208          
The following BLAST results are available for this feature:
BLAST of FC925447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
R1AP1_CAEEL1.039e-1323.41RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]
R1AP1_PAPAN2.315e-1326.40RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI07FM1 TF Citrus clementina cDNA clone KN0AAP3YI07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925447 ID=FC925447; Name=FC925447; organism=Citrus clementina; type=EST; length=691bp
TCCTCGTGTACTTTGGCTCCGGTGCCAACATTTTACCGAATTTACAGAAA
AAAATCAACAGAGAGCTTCCAGTCTCTGCCTTATCTGGTAGCATTGTTCA
GCTCAATGCTGTGGTTCTACTATGCGCTTGTGAAACAAAATGCTTTCCTT
CTCGTTACCATCAACTGCTTTGGATGTGTCATTGAGACTATTTACATCAT
CCTCTTCATCACTTATGCCCCAAAAGGCAGCCGGAACTCAACTGTCAAAC
TATTTGTTTCGATGAACGTTGGAGTGTTCTCTTTGATTCTTCTTCTCACA
CACTTTCTTGCAACCGATTCAACTCGGATCCTAATTCTTGGTTGGATTTG
TGTTGCCGTTTCTGTTAGTGTCTTTGCAGCACCCTTAAGCATTGTTGCAC
AAGTTATCCGAACAAAAAGTGTTGAGTTCATGCCATTCATCCTATCATTT
TTTCTTACGCTGAGTGCAATTATGTGGTTCGCTTACGGTCTTTTTCAGAA
AGACATATGCGTTGCTCTCCCGAATATCGTGGGGTTCCTCTTAGGATTGA
CTCAAATGTTGCTTTATGTGATATACAAGAACGCCAACAAAGTTATAATA
GAGGAAAAAAAATTACCAGAAGCACAGTTAAAGAGCATCGTAGTACTGAG
CAATTTAGGAGCTTCTGAAGTGTACCCGGTTGATATTCATC
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