FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HALHL (Oligoribonuclease OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=orn PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL    DRI+EIA ++TD  L    EGP L IHQ +  LDSM EW    H  SGLTE+V  S +TE EAE QV+ F+K+ V   T  + GNS+  D  FL ++MPDL + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPSRDRIIEIAVVVTDSNLDTLAEGPVLAIHQDRSLLDSMDEWNTRQHGRSGLTERVRASTVTEAEAEAQVLAFLKQYVPARTSPMCGNSICQDRRFLARWMPDLEAYFHYRHIDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ACTSZ (Oligoribonuclease OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=orn PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L +HQ  + LD M +WC   H A+GL E+V  S LTER AE Q ++F+K  V      + GNSV  D  FL KYMPDLA  F +  +DVS++K L   W
Sbjct:    5 KENLIWIDLEMTGLDPEQERIIEIATIVTDKNLNILAEGPVLAVHQPNQLLDKMSDWCIKTHTANGLVERVKASKLTERAAELQTIDFLKLWVPKGASPICGNSVAQDKRFLFKYMPDLADYFHYRHLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_DICDI (Probable oligoribonuclease OS=Dictyostelium discoideum GN=rexo2-1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 2
Query:  194 PLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            P+  E    +VW+DLEMTGL I  D ILE+A +ITD +L    +GP+LVIH++ E L +M +WC  HH  SGLTE V +S ++  EAEK ++EFV+K+       LAGN+V+ D  FL K MP  A    + ++DVS+IK L   WY
Sbjct:   10 PVINERSKRMVWVDLEMTGLDISKDVILEMAIVITDAELNVIEKGPNLVIHRSDEVLKNMNDWCIEHHGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGNTVHEDRRFLLKEMPTFAEHLHYRIIDVSTIKELSRRWY 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_CAEEL (Probable oligoribonuclease OS=Caenorhabditis elegans GN=C08B6.8 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 62/138 (44.93%), Postives = 89/138 (64.49%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            ++WID EMTGL +E   + EIA I+TD +L     GPD+VIHQ KE LD+M EW +N    +GL EK++ S  +  +AE +V++F+K +       +AGNS+Y+D +F+KKYMP L     +  +DVS+IK L   WY
Sbjct:   15 IIWIDCEMTGLDVEKQTLCEIALIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRNTFHENGLMEKIIASKYSMADAENEVIDFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKLDKFAHYRCIDVSTIKGLVQRWY 152          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MARAV (Oligoribonuclease OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=orn PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 66/137 (48.18%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E +RI+E+A IITD +L    EGP + IHQ    L+ M EWC   H ASGLT++V  S ++E EAE+Q +EF+ K++      L GNS+  D  FL KYMP L + F +  +DVS++K L   W
Sbjct:    7 LIWIDLEMTGLDPEQERIIEMASIITDSQLNIVAEGPVIAIHQPDSLLEQMDEWCTRTHGASGLTQRVKESTISEAEAEQQTLEFLGKHLEPGQSPLCGNSIGQDRRFLVKYMPKLEAFFHYRNLDVSTVKELARRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MANSM (Oligoribonuclease OS=Mannheimia succiniciproducens (strain MBEL55E) GN=orn PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.499e-29
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L +HQ+ E L  M +WC   H A+GL ++V  S LTER AE Q ++F+KK V      + GNSV  D  FL KYMP+LA  F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPENERIIEIATIVTDKDLNILAEGPVLAVHQSDELLAKMSDWCIKTHSANGLVDRVKASKLTERAAELQTIDFLKKWVPKGASPICGNSVAQDKRFLFKYMPELADYFHYRHLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ACTP2 (Oligoribonuclease OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=orn PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 65/137 (47.45%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E +RI+E+A I+TD  L    EGP L +HQ+ + L+ M +WC   H  +GL E+V  S LTER  E Q ++F+K+ V      + GNSV  D  FL KYMPDLA  F +  +DVS++K L   W
Sbjct:    9 LIWIDLEMTGLDPEKERIIEVATIVTDKDLNILAEGPVLTVHQSNDLLNKMSDWCIKTHTENGLIERVKQSKLTERAVELQTIDFLKQWVPKGASPICGNSVAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRW 145          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_DROME (Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 63/138 (45.65%), Postives = 86/138 (62.32%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VW+DLEMTGL IE D+ILE+ACIITD  L    EGP   I+  +E  DSM EWC  HH  SGL ++   S +   EA   V+ +++KN+      L GNSVY D +F+ K+MP + +   + +VDVS+IK L   W+
Sbjct:   38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMKFMPLVDAYLHYRIVDVSTIKELAKRWH 175          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HAEDU (Oligoribonuclease OS=Haemophilus ducreyi GN=orn PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL    DRI+EIA I+TD  L    +GP L +HQ    L  M EWC   H A+GL E+V  S LTER AE Q ++F+K+ V   +  + GNSV  D  FL +YMPDLA  F +  +DVS++K L   W
Sbjct:    9 LIWIDLEMTGLDPNQDRIIEIATIVTDKDLNILAKGPVLAVHQPNTLLSKMNEWCIKTHTANGLIERVKQSKLTERAAELQTLDFLKQWVMKGSSPICGNSVAQDKRFLYQYMPDLADYFHYRHLDVSTLKELARRW 145          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_VIBVY (Oligoribonuclease OS=Vibrio vulnificus (strain YJ016) GN=orn PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.658e-28
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  +V +I+EIA I+TD +L    EGP L IHQ++E L  M EWC N H  SGL E+V  S +TE+EA +Q + F++K V      + GNS+  D  FL ++MP+L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNTHTGSGLVERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELEGYFHYRYIDVSTLKELTRRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_HALHL2.313e-3049.64Oligoribonuclease OS=Halorhodospira halophila (str... [more]
ORN_ACTSZ3.021e-3050.00Oligoribonuclease OS=Actinobacillus succinogenes (... [more]
ORN_DICDI5.153e-3046.94Probable oligoribonuclease OS=Dictyostelium discoi... [more]
ORN_CAEEL8.790e-3044.93Probable oligoribonuclease OS=Caenorhabditis elega... [more]
ORN_MARAV1.499e-2948.18Oligoribonuclease OS=Marinobacter aquaeolei (strai... [more]
ORN_MANSM1.499e-2949.64Oligoribonuclease OS=Mannheimia succiniciproducens... [more]
ORN_ACTP24.363e-2947.45Oligoribonuclease OS=Actinobacillus pleuropneumoni... [more]
ORN_DROME5.698e-2945.65Probable oligoribonuclease OS=Drosophila melanogas... [more]
ORN_HAEDU1.269e-2848.91Oligoribonuclease OS=Haemophilus ducreyi GN=orn PE... [more]
ORN_VIBVY1.658e-2846.72Oligoribonuclease OS=Vibrio vulnificus (strain YJ0... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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