FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_KLEP7 (Oligoribonuclease OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+   L  M EW    H  SGL ++V  S ++E +AE   ++F+K+ V      + GNS+  D  FL KYMP L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDEWNVRTHTGSGLVDRVKASTVSEHDAELATIDFLKQWVPAGKSPICGNSIGQDRRFLFKYMPQLEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRATT (Oligoribonuclease OS=Francisella tularensis subsp. tularensis GN=orn PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRAT1 (Oligoribonuclease OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=orn PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ERWCT (Oligoribonuclease OS=Erwinia carotovora subsp. atroseptica GN=orn PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.514e-25
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + DRI+EIA ++TD  L    EGP L +HQ+   L  M +W    H ASGLT++V  S   ER AE + + F++K V      + GNS+  D  FL +YMP+L + F +  +DVS++K L   W
Sbjct:    7 LIWIDLEMTGLNPDHDRIIEIATLVTDANLNVLAEGPVLAVHQSDSQLALMDDWNVRTHGASGLTDRVKVSTADERAAELETLAFLQKWVPAGKSPICGNSIGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_YEAST (Oligoribonuclease, mitochondrial OS=Saccharomyces cerevisiae GN=REX2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.112e-24
Identity = 72/163 (44.17%), Postives = 100/163 (61.35%), Query Frame = 2
Query:  164 TLENQQN-SQTP-LEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKL--TKSVEGP-----DLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVK-----KNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSI 610
            T++N Q+ +QTP L+ +   PLVWID EMTGL    DRI+EI CIITDG L   K+ +G      + VIH   E ++ M EWC  HH  SGLT KVL S  T  + E +++E+++     KNVG    +LAGNSV++D +F+ +  P +     + +VDVSSI
Sbjct:   34 TIQNLQSMAQTPELKTKLFKPLVWIDCEMTGLDHVNDRIIEICCIITDGHLAPVKAADGQGDSHYESVIHYGPEVMNKMNEWCIEHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDKNVG----VLAGNSVHMDRLFMVREFPKVIDHLFYRIVDVSSI 192          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_NEIMA (Oligoribonuclease OS=Neisseria meningitidis serogroup A GN=orn PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.112e-24
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L W+D+EMTGL  E DRI+E+A IITD  L    +     IHQ+ E LD+M EW    H  +GLT++V  S+ TE E E+++++F+ + V      + GNS++ D  F+ KYMP L + F +  +DVS++K L   W
Sbjct:    4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDELLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPRRATPMCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURS3 (Oligoribonuclease OS=Burkholderia sp. (strain 383) GN=orn PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.112e-24
Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE EA +Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W
Sbjct:    7 STSQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_DICNV (Oligoribonuclease OS=Dichelobacter nodosus (strain VCS1703A) GN=orn PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.452e-24
Identity = 61/141 (43.26%), Postives = 82/141 (58.16%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            K  LVWIDLEMTGL  + D I+EIA I+TD +L    EGP + ++Q +  L  M  W Q HH ASGL E+V  S+    EAE Q + F+++        + GNS+  D  FL + MP L + F +  +DVS+IK L   WY
Sbjct:    4 KNNLVWIDLEMTGLDPQHDEIIEIATIVTDAQLNILAEGPVIAVYQPEPILAQMDAWNQKHHGASGLIERVRQSSFNTLEAEAQTLSFLEQYSEKGRSPICGNSICQDRRFLSRLMPRLEAFFHYRNLDVSTIKELVARWY 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BUCAI (Oligoribonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=orn PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.452e-24
Identity = 62/140 (44.29%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  +V RI+EIA +ITD  L    EGP + I+Q KE +  M EW +  HE +GL ++V  S   E++AE + + F+KK V      + GNS+  D  FL +YMP L + F +  +DVS+IK L   W
Sbjct:    5 KKNLIWIDLEMTGLNPKVHRIIEIATLITDTNLNIIAEGPVIPIYQKKEHILVMDEWNKRIHENNGLIKRVEKSLYNEQKAEHETILFLKKWVPIQVSPMCGNSIAQDRRFLFQYMPHLENYFHYRYIDVSTIKELAYRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURCH (Oligoribonuclease OS=Burkholderia cenocepacia (strain HI2424) GN=orn PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE EA  Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRW 156          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_KLEP76.519e-2543.07Oligoribonuclease OS=Klebsiella pneumoniae subsp. ... [more]
ORN_FRATT8.514e-2541.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRAT18.514e-2541.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_ERWCT8.514e-2543.80Oligoribonuclease OS=Erwinia carotovora subsp. atr... [more]
ORN_YEAST1.112e-2444.17Oligoribonuclease, mitochondrial OS=Saccharomyces ... [more]
ORN_NEIMA1.112e-2441.43Oligoribonuclease OS=Neisseria meningitidis serogr... [more]
ORN_BURS31.112e-2438.00Oligoribonuclease OS=Burkholderia sp. (strain 383)... [more]
ORN_DICNV1.452e-2443.26Oligoribonuclease OS=Dichelobacter nodosus (strain... [more]
ORN_BUCAI1.452e-2444.29Oligoribonuclease OS=Buchnera aphidicola subsp. Ac... [more]
ORN_BURCH1.897e-2438.00Oligoribonuclease OS=Burkholderia cenocepacia (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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