FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURCA (Oligoribonuclease OS=Burkholderia cenocepacia (strain AU 1054) GN=orn PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE EA  Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_XANCP (Oligoribonuclease OS=Xanthomonas campestris pv. campestris GN=orn PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.477e-24
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D I+EIA I+TD +L    EGP+L I  + E L++M EW +N H  SGL ++VL S +T  +AE Q V F+ + +      + GNS+  D  FL + M  L   F +  +DVS+IK L   W
Sbjct:   11 LIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRW 147          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_XANC8 (Oligoribonuclease OS=Xanthomonas campestris pv. campestris (strain 8004) GN=orn PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.477e-24
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D I+EIA I+TD +L    EGP+L I  + E L++M EW +N H  SGL ++VL S +T  +AE Q V F+ + +      + GNS+  D  FL + M  L   F +  +DVS+IK L   W
Sbjct:   11 LIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRW 147          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_NEIMF (Oligoribonuclease OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=orn PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.477e-24
Identity = 60/141 (42.55%), Postives = 87/141 (61.70%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L W+D+EMTGL  E DRI+E+A IITD  L    +     +HQ+ E LD+M EW    H  +GLT++V  S  TE E E+++++F+ + V G  TP + GNS++ D  F+ KYMP L + F +  +DVS++K L   W
Sbjct:    4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAVHQSDELLDNMDEWNTATHGRTGLTQRVRESLHTEAEVEQKLLDFMSEWVPGRATP-MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_COLP3 (Oligoribonuclease OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=orn PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.477e-24
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL+   D ILEIA IITD +L    +GP   I QT + LD+M  WC  HH  SGLT++   S ++   A K+ + FV++ V      + GNS+  D  F+ KYMPD    F +  +DVS+IK L   W
Sbjct:    8 LIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPWCIEHHGKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCGNSIGQDRRFINKYMPDFEDHFHYRNLDVSTIKELAKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSEMY (Oligoribonuclease OS=Pseudomonas mendocina (strain ymp) GN=orn PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.235e-24
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ E D I+E+A I+TD +L    EGP + IHQ+ E L  M EW    H  SGLT++V  S +    AE Q + F+++ V      + GNS+  D  FL KYMP L + F +  +DVS++K L   W
Sbjct:    7 LIWIDLEMTGLEPERDVIIEMATIVTDSELNVLAEGPVIAIHQSDETLAGMDEWNTRTHGQSGLTQRVRESRIDTATAEAQTIAFLEQWVPKGKSPICGNSIGQDRRFLYKYMPALEAYFHYRYLDVSTLKILAGMW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_NEIG1 (Oligoribonuclease OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=orn PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.235e-24
Identity = 59/141 (41.84%), Postives = 88/141 (62.41%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L W+D+EMTGL  E DRI+E+A IITD  L    +     IHQ+ + LD+M EW    H  +GLT++V  S+ TE E E+++++F+ + + G  TP + GNS++ D  F+ KYMP L + F +  +DVS++K L   W
Sbjct:    4 KNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEVYAIHQSDDLLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWIPGRATP-MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_XANC5 (Oligoribonuclease OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=orn PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D I+EIA I+TD +L    EGP+L I    E L++M EW +N H  SGL ++VL S +T  +AE Q V F+ + +      + GNS+  D  FL + M  L   F +  +DVS+IK L   W
Sbjct:   11 LIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHPLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRW 147          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURCM (Oligoribonuclease OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=orn PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 56/150 (37.33%), Postives = 89/150 (59.33%), Query Frame = 2
Query:  182 NSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++  P     ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP   IHQ+ E L  M +W ++ H  SGL ++V  S +TE +A  Q+  F+ + V      + GNS+  D  F+ ++MP+    F +  +DVS++K LC  W
Sbjct:    7 SASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEADAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHESW (Oligoribonuclease OS=Shewanella sp. (strain W3-18-1) GN=orn PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.519e-24
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDRI+EIA ++TD +L    +GP + IHQ  E L +M +W Q HH  SGL ++V  S   E +A  + + F+++ V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDDWNQKHHGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_BURCA1.897e-2438.00Oligoribonuclease OS=Burkholderia cenocepacia (str... [more]
ORN_XANCP2.477e-2443.07Oligoribonuclease OS=Xanthomonas campestris pv. ca... [more]
ORN_XANC82.477e-2443.07Oligoribonuclease OS=Xanthomonas campestris pv. ca... [more]
ORN_NEIMF2.477e-2442.55Oligoribonuclease OS=Neisseria meningitidis serogr... [more]
ORN_COLP32.477e-2443.80Oligoribonuclease OS=Colwellia psychrerythraea (st... [more]
ORN_PSEMY3.235e-2443.80Oligoribonuclease OS=Pseudomonas mendocina (strain... [more]
ORN_NEIG13.235e-2441.84Oligoribonuclease OS=Neisseria gonorrhoeae (strain... [more]
ORN_XANC54.226e-2443.07Oligoribonuclease OS=Xanthomonas campestris pv. ve... [more]
ORN_BURCM4.226e-2437.33Oligoribonuclease OS=Burkholderia ambifaria (strai... [more]
ORN_SHESW5.519e-2442.34Oligoribonuclease OS=Shewanella sp. (strain W3-18-... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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