FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSEE4 (Oligoribonuclease OS=Pseudomonas entomophila (strain L48) GN=orn PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 56/137 (40.88%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D I+E+A I+TD +L    EGP + IH + E L  M EW    H  SGLT++V  S ++  EAE Q + F+++ V      + GNS+  D  FL ++M  L + F +  +DVS++K L   W
Sbjct:    7 LIWIDLEMTGLDPDSDVIIEMATIVTDSELNTLAEGPVIAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMRGLENYFHYRNLDVSTLKELAARW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSEPF (Oligoribonuclease OS=Pseudomonas fluorescens (strain Pf0-1) GN=orn PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 57/137 (41.61%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E D I+E+A I+TD  L    EGP + IH + E L  M EW    H  SGLT++V  S ++  EAE + + F+++ V      + GNS+  D  FL  +M  L S F +  +DVS++K L   W
Sbjct:    7 LIWIDLEMTGLDPENDVIIEMATIVTDSDLNTLAEGPVIAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPICGNSICQDRRFLYTHMKALESYFHYRNLDVSTLKELAARW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PROAC (Oligoribonuclease OS=Propionibacterium acnes GN=orn PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 60/143 (41.96%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-----LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D ++E+A ++TDG+L    EG D++I    + LD M ++ +N H  SGL  + L   LT  +A+ QV+++++    TY P      LAGN++  D  FL K MP L S   +  VDVSSIK L   WY
Sbjct:    2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHTTSGLLAE-LDKGLTMAQAQDQVLDYIR----TYVPQAGKAPLAGNTIGTDRSFLAKDMPKLESYVHYRNVDVSSIKELARRWY 139          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_COREF (Oligoribonuclease OS=Corynebacterium efficiens GN=orn PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.963e-21
Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+DLEMTGL +E   I+E+A ++TD  L    EG DLV+H T E L  M ++    H++SGLT  +  S ++ ++AE  V+  ++++     P  LAGNS+  D  F+++ MP L +   + +VDVSS+K L   W
Sbjct:   21 LVWVDLEMTGLDLERHVIVEVAALVTDANLNILGEGVDLVVHATDEELARMDDFVTRMHDSSGLTPLIRASTVSLKDAEDAVLALIEEHCDPAHPAPLAGNSIATDRAFIREQMPRLDAALHYRMVDVSSVKELARRW 158          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_TROWT (Oligoribonuclease OS=Tropheryma whipplei (strain Twist) GN=orn PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 52/137 (37.96%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D EMTGL  E D +LE+A ++TD  L    EG ++V+  + E L +M  +    H  SGL ++ L + +   EA+  V E++ K+V T   +++GNS+  D +F+ +YMPD+ ++  + ++DVSSIK L + W
Sbjct:   10 LVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEALGAMDNYVARMHRVSGLLDE-LSNGVPVSEAQAMVKEYITKHVKT-GGIMSGNSIATDRLFITRYMPDVHAILHYRMIDVSSIKELAVRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_TROW8 (Oligoribonuclease OS=Tropheryma whipplei (strain TW08/27) GN=orn PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 52/137 (37.96%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D EMTGL  E D +LE+A I+TD  L    EG ++V+  + E L +M  +    H  SGL ++ L + +   EA+  V E++ K++ T   +++GNS+  D +F+ +YMPD+ ++  + ++DVSSIK L + W
Sbjct:   10 LVWVDCEMTGLNPERDELLEVAVIVTDKDLLPLDEGVNVVVSPSSEALGAMDNYVARMHRVSGLLDE-LSNGVPVSEAQAMVKEYITKHIKT-GGIMSGNSIATDRLFITRYMPDVHAILHYRMIDVSSIKELAVRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_CORDI (Oligoribonuclease OS=Corynebacterium diphtheriae GN=orn PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVWIDLEMTGL+++   I+E+A +ITD  L    EG DLV+H T E L  M ++    H +SGL E++  S ++ +EAE  V+  + ++     P  LAGNS+  D  F++  MP L     + +VDVSS+K L   W
Sbjct:   12 LVWIDLEMTGLELDRHVIVEVAALITDADLNIIGEGVDLVVHATPEQLAEMDDFVTTMHTSSGLLEEIKASTVSLQEAEDAVLALIAQHCDPEHPAPLAGNSIATDRSFIRAQMPRLDKALHYRMVDVSSLKELSRRW 149          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCTU (Oligoribonuclease OS=Mycobacterium tuberculosis GN=orn PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D+++EIA ++TD  L    +G D+V+H     L  M +     H  SGL ++V  S +    AE  V++++ ++V    T  LAGNS+  D  F+ + MP L S   + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCTA (Oligoribonuclease OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=orn PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D+++EIA ++TD  L    +G D+V+H     L  M +     H  SGL ++V  S +    AE  V++++ ++V    T  LAGNS+  D  F+ + MP L S   + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCBP (Oligoribonuclease OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=orn PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D+++EIA ++TD  L    +G D+V+H     L  M +     H  SGL ++V  S +    AE  V++++ ++V    T  LAGNS+  D  F+ + MP L S   + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMIDVSSIKELCRRWY 143          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_PSEE45.165e-2240.88Oligoribonuclease OS=Pseudomonas entomophila (stra... [more]
ORN_PSEPF1.151e-2141.61Oligoribonuclease OS=Pseudomonas fluorescens (stra... [more]
ORN_PROAC1.151e-2141.96Oligoribonuclease OS=Propionibacterium acnes GN=or... [more]
ORN_COREF1.963e-2139.86Oligoribonuclease OS=Corynebacterium efficiens GN=... [more]
ORN_TROWT4.373e-2137.96Oligoribonuclease OS=Tropheryma whipplei (strain T... [more]
ORN_TROW84.373e-2137.96Oligoribonuclease OS=Tropheryma whipplei (strain T... [more]
ORN_CORDI4.373e-2141.30Oligoribonuclease OS=Corynebacterium diphtheriae G... [more]
ORN_MYCTU9.742e-2139.57Oligoribonuclease OS=Mycobacterium tuberculosis GN... [more]
ORN_MYCTA9.742e-2139.57Oligoribonuclease OS=Mycobacterium tuberculosis (s... [more]
ORN_MYCBP9.742e-2139.57Oligoribonuclease OS=Mycobacterium bovis (strain B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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