FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCBO (Oligoribonuclease OS=Mycobacterium bovis GN=orn PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.742e-21
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D+++EIA ++TD  L    +G D+V+H     L  M +     H  SGL ++V  S +    AE  V++++ ++V    T  LAGNS+  D  F+ + MP L S   + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLGSDKLIEIAALVTDADLNILGDGVDVVMHADDAALSGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAGNSIATDRAFIARDMPTLDSFLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCSS (Oligoribonuclease OS=Mycobacterium sp. (strain MCS) GN=orn PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D ++EIA ++TD  L    +G D+VIH   E LD+M       H  SGL E+V  S +    AE+ V+++++ +V    T  LAGNS+  D  F+ + M  L     + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIHAPDEALDAMIPVVTEMHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMAKLDDYLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCSK (Oligoribonuclease OS=Mycobacterium sp. (strain KMS) GN=orn PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D ++EIA ++TD  L    +G D+VIH   E LD+M       H  SGL E+V  S +    AE+ V+++++ +V    T  LAGNS+  D  F+ + M  L     + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIHAPDEALDAMIPVVTEMHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMAKLDDYLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCSJ (Oligoribonuclease OS=Mycobacterium sp. (strain JLS) GN=orn PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.662e-20
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D ++EIA ++TD  L    +G D+VIH   E LD+M       H  SGL E+V  S +    AE+ V+++++ +V    T  LAGNS+  D  F+ + M  L     + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLRSDLLIEIAVLVTDADLNILGDGLDVVIHAPDEALDAMIPVVTEMHTRSGLIEEVRASTVDLATAEEMVLDYIRGHVKQAKTAPLAGNSIATDRGFIARDMAKLDDYLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_MYCLE (Oligoribonuclease OS=Mycobacterium leprae GN=orn PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL +  D+++EIA ++TD  L    +G D+VIH     L SM +     H  SGL  +V  S +    AE  V++++  +V    T  LAGNS+  D  F+ + MP L S   + ++DVSSIK LC  WY
Sbjct:    5 LVWIDCEMTGLDLGSDQLIEIAALVTDADLNILGDGVDVVIHIDSTALSSMIDVVAEMHSRSGLINEVESSIVDLVTAESIVLDYINNHVKQPKTAPLAGNSIATDRSFIARDMPTLDSFLHYRMIDVSSIKELCRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_LEIXX (Oligoribonuclease OS=Leifsonia xyli subsp. xyli GN=orn PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNV-GTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL + VD ++EIA +ITD  L     G  +VI      LD+M ++ +  H  SGL E++    ++  EAE + +E+V +      T  LAGN++  D MFL KYMP L +   +  VDVSSIK L   W+
Sbjct:    8 LVWIDCEMTGLDLAVDELVEIAVVITDFDLNVLDPGLSIVIKPDASALDNMNDFVREMHTTSGLIEEI-PGGVSLAEAEYEALEYVLRFAPAARTAPLAGNTIGTDRMFLAKYMPRLDTHLHYRNVDVSSIKELARRWF 145          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_STRGR (Oligoribonuclease OS=Streptomyces griseus GN=orn PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.191e-18
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VWID EMTGL +  D ++E+A ++TD +L    EG D+VI      L++M E  +  H ASGL ++ L    T  +AE+QV+ +V+++V       L GNSV  D  FL + M +L     + +VDVSS+K L   WY
Sbjct:    5 MVWIDCEMTGLSLADDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRQMHTASGLLDE-LAGGTTLADAEEQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMRELEGYLHYRIVDVSSVKELARRWY 142          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_STRAW (Oligoribonuclease OS=Streptomyces avermitilis GN=orn PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VWID EMTGL +  D ++E+A ++TD +L    EG D+VI      L++M E  +  H ASGL ++ L +  T  +AE QV+ +V+++V       L GNSV  D  FL + M  L +   + +VDVSS+K L   WY
Sbjct:    5 MVWIDCEMTGLSLSDDALIEVAALVTDSELNVLGEGVDIVIRPPDAALETMPEVVRTMHTASGLLDE-LAAGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLARDMSALETYLHYRIVDVSSVKELARRWY 142          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_STRCO (Oligoribonuclease OS=Streptomyces coelicolor GN=orn PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +VWID EMTGL +  D ++E+A ++TD +L    EG D+VI   +  L++M E  +  H ASGL  + L    T  +AE QV+ +V+++V       L GNSV  D  FL + M  L     + +VDVSSIK L   WY
Sbjct:    5 MVWIDCEMTGLSLSDDALIEVAALVTDSELNILGEGVDIVIRPPERALETMPEVVREMHTASGLLAE-LDGGTTLADAEAQVLAYVREHVKEPGKAPLCGNSVGTDRGFLLRDMATLEGYLHYRIVDVSSIKELARRWY 142          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BIFLO (Oligoribonuclease OS=Bifidobacterium longum GN=orn PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.901e-16
Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = 2
Query:  221 LVWIDLEMTGLKI-EVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGT-YTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            L+WID EMTGL I   D ++E++ + TD  L    EG D VI  +++ ++ M ++ +  H  SGL  +   + L+  EAE++V E+V +       PLLAGN++  D  FL  YMP+L S   +  VDVS+ K L   WY
Sbjct:   17 LIWIDCEMTGLDIFGGDELVEVSVVPTDFDLNVLDEGVDYVIKPSEKAVNHMNDFVRQMHTRSGLINE-WENGLSLAEAEQKVTEYVLRFTPEGVRPLLAGNTIGSDKKFLDHYMPNLMSHLHYRSVDVSTFKELARRWY 155          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_MYCBO9.742e-2139.57Oligoribonuclease OS=Mycobacterium bovis GN=orn PE... [more]
ORN_MYCSS1.662e-2041.01Oligoribonuclease OS=Mycobacterium sp. (strain MCS... [more]
ORN_MYCSK1.662e-2041.01Oligoribonuclease OS=Mycobacterium sp. (strain KMS... [more]
ORN_MYCSJ1.662e-2041.01Oligoribonuclease OS=Mycobacterium sp. (strain JLS... [more]
ORN_MYCLE2.170e-2041.01Oligoribonuclease OS=Mycobacterium leprae GN=orn P... [more]
ORN_LEIXX1.407e-1941.73Oligoribonuclease OS=Leifsonia xyli subsp. xyli GN... [more]
ORN_STRGR1.191e-1839.57Oligoribonuclease OS=Streptomyces griseus GN=orn P... [more]
ORN_STRAW2.031e-1839.57Oligoribonuclease OS=Streptomyces avermitilis GN=o... [more]
ORN_STRCO2.653e-1840.29Oligoribonuclease OS=Streptomyces coelicolor GN=or... [more]
ORN_BIFLO1.901e-1638.57Oligoribonuclease OS=Bifidobacterium longum GN=orn... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
back to top