FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_VIBVU (Oligoribonuclease OS=Vibrio vulnificus GN=orn PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.658e-28
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  +V +I+EIA I+TD +L    EGP L IHQ++E L  M EWC N H  SGL E+V  S +TE+EA +Q + F++K V      + GNS+  D  FL ++MP+L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPDVHKIIEIASIVTDSELNILAEGPVLAIHQSEEELAKMDEWCTNTHTGSGLVERVRGSQITEQEAVEQTIAFLEKWVPKGVSPICGNSIGQDRRFLYRHMPELEGYFHYRYIDVSTLKELTRRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHEAM (Oligoribonuclease OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=orn PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.828e-28
Identity = 66/137 (48.18%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ EVDRILEIA ++TD  L    +GP + IHQ+ E L +M +W Q HH ASGL E+V  S  TE +A  Q ++F+  +V      + GNSV  D  FL KYM +L   F +  +DVS+IK L   W
Sbjct:    8 LIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDDWNQQHHGASGLIERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYMRELEDFFHYRNIDVSTIKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_VIBPA (Oligoribonuclease OS=Vibrio parahaemolyticus GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.693e-28
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL  E  +I+EIA I+TD +L    EGP L +HQ +E L  M +WC N H ASGL E+V +S ++E++A  Q +EF++K V      + GNS+  D  FL K+MP+L   F +  +DVS++K L   W
Sbjct:    8 LIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNTHTASGLVERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMPELEEYFHYRYLDVSTLKELTRRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_RALSO (Oligoribonuclease OS=Ralstonia solanacearum GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.693e-28
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D+EMTGL  E DRI+E+A ++TD +L    EGP LVIHQ  E LD M  W +  H  SGL +KV  S  TE +AE  +++F+KK V      + GNS+  D  F+ +YMP L + F +  +DVS++K LC  W
Sbjct:   30 LVWLDMEMTGLSPENDRIIEVAMVVTDSELNVLAEGPVLVIHQPDEILDGMDAWNKGTHGRSGLIDKVKASTTTEAQAEADLLDFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLKELCKRW 166          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_LEGPL (Oligoribonuclease OS=Legionella pneumophila (strain Lens) GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.693e-28
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ E DRI+E+A I+TD +L    EGP + + Q K  LDSM  W    H  SGL ++VL S ++E +AE+  +EF+K+ V      + GNS+  D  FL KYMP+LA+ F +  +DVSS+K L + W
Sbjct:    7 LIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQPKILLDSMDAWNTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSPMCGNSICQDRRFLYKYMPELAAYFHYRNLDVSSLKELVLRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_LEGPH (Oligoribonuclease OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.693e-28
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ E DRI+E+A I+TD +L    EGP + + Q K  LDSM  W    H  SGL ++VL S ++E +AE+  +EF+K+ V      + GNS+  D  FL KYMP+LA+ F +  +DVSS+K L + W
Sbjct:    7 LIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQPKILLDSMDAWNTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSPMCGNSICQDRRFLYKYMPELAAYFHYRNLDVSSLKELVLRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_LEGPC (Oligoribonuclease OS=Legionella pneumophila (strain Corby) GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.693e-28
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ E DRI+E+A I+TD +L    EGP + + Q K  LDSM  W    H  SGL ++VL S ++E +AE+  +EF+K+ V      + GNS+  D  FL KYMP+LA+ F +  +DVSS+K L + W
Sbjct:    7 LIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQPKILLDSMDAWNTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSPMCGNSICQDRRFLYKYMPELAAYFHYRNLDVSSLKELVLRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_LEGPA (Oligoribonuclease OS=Legionella pneumophila (strain Paris) GN=orn PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.693e-28
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ E DRI+E+A I+TD +L    EGP + + Q K  LDSM  W    H  SGL ++VL S ++E +AE+  +EF+K+ V      + GNS+  D  FL KYMP+LA+ F +  +DVSS+K L + W
Sbjct:    7 LIWIDLEMTGLEPEQDRIIEMATIVTDPQLNILAEGPVIAVSQPKILLDSMDAWNTKQHNQSGLVKRVLESNVSESQAEQLTIEFLKQYVDKGKSPMCGNSICQDRRFLYKYMPELAAYFHYRNLDVSSLKELVLRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHELP (Oligoribonuclease OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=orn PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL+ EVDRI+EIA I+TD +L    EGP + IHQ+++ L +M +W Q HH  SGL ++V  S  +E++A +Q + F+ ++V      + GNS+  D  FL +YMP L   F +  +DVSS+K L   W
Sbjct:    8 LIWVDLEMTGLEPEVDRIIEIATIVTDKELNILAEGPVIAIHQSEDVLAAMDDWNQKHHGESGLIDRVRASDFSEQDAIEQTIAFLSEHVPAGVSPMCGNSIGQDRRFLNRYMPTLEDYFHYRNIDVSSVKELVRRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_THIDA (Oligoribonuclease OS=Thiobacillus denitrificans (strain ATCC 25259) GN=orn PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 59/137 (43.07%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+D+EMTGL  E DRI+E+A ++TD  L    EGP LV+HQ    +D+M  W +  H  SGL ++V  S L+E +AE Q++EFVK++V   T  + GNS+  D  F+ ++MP+L + F +  +DVS++K L   W
Sbjct:    8 LLWLDMEMTGLSPESDRIIELAIVVTDADLNTVAEGPVLVVHQPDAVMDAMDSWNRGTHGKSGLIDRVKASQLSESDAEAQMLEFVKQHVSPRTSPMCGNSICQDRRFMARHMPELEAFFHYRNLDVSTLKELAKRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_VIBVU1.658e-2846.72Oligoribonuclease OS=Vibrio vulnificus GN=orn PE=3... [more]
ORN_SHEAM2.828e-2848.18Oligoribonuclease OS=Shewanella amazonensis (strai... [more]
ORN_VIBPA3.693e-2845.26Oligoribonuclease OS=Vibrio parahaemolyticus GN=or... [more]
ORN_RALSO3.693e-2845.99Oligoribonuclease OS=Ralstonia solanacearum GN=orn... [more]
ORN_LEGPL3.693e-2846.72Oligoribonuclease OS=Legionella pneumophila (strai... [more]
ORN_LEGPH3.693e-2846.72Oligoribonuclease OS=Legionella pneumophila subsp.... [more]
ORN_LEGPC3.693e-2846.72Oligoribonuclease OS=Legionella pneumophila (strai... [more]
ORN_LEGPA3.693e-2846.72Oligoribonuclease OS=Legionella pneumophila (strai... [more]
ORN_SHELP4.823e-2844.53Oligoribonuclease OS=Shewanella loihica (strain AT... [more]
ORN_THIDA1.075e-2743.07Oligoribonuclease OS=Thiobacillus denitrificans (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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