FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_CHRVO (Oligoribonuclease OS=Chromobacterium violaceum GN=orn PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 59/137 (43.07%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+D+EMTGL  + DRI+E+A I+TD  L    E P LVIHQ    LD M +W +N H  SGL EKV +S ++E EAE+ ++EF+ ++V      + GN+++ D  F+ ++MP L + F +  +DVS++K LC  W
Sbjct:    8 LIWLDMEMTGLNPDQDRIIEVAMIVTDSNLNVLAESPVLVIHQPDAILDGMDDWNKNTHGKSGLIEKVKNSTVSEAEAEQLLLEFMMQHVPERATPMCGNTIHQDRRFMARWMPKLEAYFHYRNLDVSTLKELCKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_YERPS (Oligoribonuclease OS=Yersinia pseudotuberculosis GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L +HQ+ E L  M EW    H  SGL E+V  S   +R+AE Q +EF+K+ V      + GNSV  D  FL +YMP+L + F +  VDVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVRTHTGSGLVERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPELEAYFHYRYVDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_YERPE (Oligoribonuclease OS=Yersinia pestis GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L +HQ+ E L  M EW    H  SGL E+V  S   +R+AE Q +EF+K+ V      + GNSV  D  FL +YMP+L + F +  VDVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVRTHTGSGLVERVKASPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPELEAYFHYRYVDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_YERP3 (Oligoribonuclease OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L +HQ+ E L  M EW    H  SGL E+V  S   +R+AE Q +EF+K+ V      + GNSV  D  FL +YMP+L + F +  VDVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSAEQLGLMDEWNVRTHTGSGLVERVKTSPFNDRDAELQTIEFLKQWVPAGVSPICGNSVGQDRRFLFRYMPELEAYFHYRYVDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_VIBHB (Oligoribonuclease OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 61/137 (44.53%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL  E  +I+EIA I+TD +L    EGP L +HQ +E L  M +WC N H +SGL E+V +S ++E++A  Q +EF++K V      + GNS+  D  FL K+MP+L   F +  +DVS++K L   W
Sbjct:    8 LIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELVKMDDWCTNTHTSSGLVERVRNSDVSEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMPELEEYFHYRYLDVSTLKELTRRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_CORGL (Oligoribonuclease OS=Corynebacterium glutamicum GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 65/157 (41.40%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  167 LENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +   +N+ TP        LVW+DLEMTGL ++   I+E+A ++TD  L    EG DLV+H T+E L  M ++  N HE+SGLTE++  SA+T +EAE  V+  ++K+     P  LAGNS+  D  F++++MP L     + +VDVSS+K L   WY
Sbjct:    1 MSESENNTTPAVAARDDRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTNMHESSGLTEQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREHMPRLDEALHYRMVDVSSVKELARRWY 157          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_AZOSE (Oligoribonuclease OS=Azoarcus sp. (strain EbN1) GN=orn PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 58/137 (42.34%), Postives = 90/137 (65.69%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+D+EMTGL+ + DRI+EIA +ITD +L    E P + +HQ    LD+M EW +N H  SGLT++V  S + E +AE Q++ F++++V  +T  + GNS+  D  F+ +YMP L + F +  +DVS++K L   W
Sbjct:    8 LIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVLDAMDEWNRNTHGKSGLTDRVKASLIGEADAEAQMLAFLQQHVPAHTSPMCGNSICQDRRFMARYMPHLEAWFHYRNLDVSTLKELAKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_RUTMC (Oligoribonuclease OS=Ruthia magnifica subsp. Calyptogena magnifica GN=orn PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  E D I+EIA I+T+ +L    +GP LVIHQ  E L +M +W   HH +SGL  +V  S+L+ ++AE Q +EF+KK V T    + GN++  D  FL  YMP L   F +  +DVS++K L + W
Sbjct:    4 KTNLIWIDLEMTGLIPEKDVIIEIATIVTNVQLHIIAQGPSLVIHQNDEILSNMDQWNTEHHTSSGLLRRVRESSLSCKQAEAQTLEFLKKYVHTGASPMCGNTICQDRRFLYNYMPTLERFFHYRHIDVSTLKELVIRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ACIAD (Oligoribonuclease OS=Acinetobacter sp. (strain ADP1) GN=orn PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D+I+EIA IITD  L    EGP L +HQ    L++M EW    H  SGL E+V  S LT R+ E Q +EF+KK V   T  + GNS+  D  F+ + MP+L   F +  +DVSS+K L   W
Sbjct:    9 LIWIDLEMTGLDTDNDQIIEIATIITDDHLNIVAEGPVLAVHQPDRILNAMDEWNTRQHGQSGLIERVRRSKLTARDVELQTLEFLKKWVNPKTSPMCGNSICQDRRFMHRLMPELEQYFHYRNLDVSSVKELAKRW 145          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSEHT (Oligoribonuclease OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=orn PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.126e-27
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+W+DLEMTGL+ E D+ILEIA ++TD  L    EGP + IHQ+ E LD+M EWC   H  SGLT +   S   E  A +Q + F+K+ V      + GNS+  D  F+ KYM +L   F +  +DVS+IK L   W
Sbjct:    5 KSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSNELLDNMDEWCTTQHGKSGLTARCKASTYDEAYAVEQTIAFLKQWVPAGASPMCGNSIGQDRRFMNKYMRELEDFFHYRNLDVSTIKELARRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_CHRVO1.075e-2743.07Oligoribonuclease OS=Chromobacterium violaceum GN=... [more]
ORN_YERPS1.833e-2747.45Oligoribonuclease OS=Yersinia pseudotuberculosis G... [more]
ORN_YERPE1.833e-2747.45Oligoribonuclease OS=Yersinia pestis GN=orn PE=3 S... [more]
ORN_YERP31.833e-2747.45Oligoribonuclease OS=Yersinia pseudotuberculosis s... [more]
ORN_VIBHB1.833e-2744.53Oligoribonuclease OS=Vibrio harveyi (strain ATCC B... [more]
ORN_CORGL1.833e-2741.40Oligoribonuclease OS=Corynebacterium glutamicum GN... [more]
ORN_AZOSE1.833e-2742.34Oligoribonuclease OS=Azoarcus sp. (strain EbN1) GN... [more]
ORN_RUTMC2.394e-2745.71Oligoribonuclease OS=Ruthia magnifica subsp. Calyp... [more]
ORN_ACIAD2.394e-2746.72Oligoribonuclease OS=Acinetobacter sp. (strain ADP... [more]
ORN_PSEHT3.126e-2744.29Oligoribonuclease OS=Pseudoalteromonas haloplankti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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