FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928203_ssr83 microsatellite FC928203_ssr83:83..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14944 contig Ccv1_Contig14944:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_YERE8 (Oligoribonuclease OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=orn PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP L +HQ+ E L  M EW    H  SGL E+V  S   + +AE Q +EF+K+ V   T  + GNSV  D  FL +YMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPVLAVHQSDEQLGLMDEWNVRTHTGSGLVERVKASPFNDHDAELQTIEFLKQWVPAGTSPICGNSVGQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_CORGB (Oligoribonuclease OS=Corynebacterium glutamicum (strain R) GN=orn PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  167 LENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPL-LAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            +   +N+ TP        LVW+DLEMTGL ++   I+E+A ++TD  L    EG DLV+H T+E L  M ++  N HE+SGLTE++  SA+T +EAE  V+  ++K+     P  LAGNS+  D  F+++ MP L     + +VDVSS+K L   WY
Sbjct:    1 MSESENNTTPAVAARDDRLVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTNMHESSGLTEQIRESAVTLKEAEDAVLALIEKHCDPAHPAPLAGNSIATDRAFIREQMPRLDEALHYRMVDVSSVKELARRWY 157          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PHOLL (Oligoribonuclease OS=Photorhabdus luminescens subsp. laumondii GN=orn PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.965e-27
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA I+TD  L    EGP + +HQ+ E L  M +W    H  SGL E+V  S + +REAEK  +EF++K V      + GNSV  D  FL +YMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATIVTDANLNILDEGPVIAVHQSDEQLALMDKWNVRTHTGSGLVERVKASKIDDREAEKATIEFLEKWVPAGASPICGNSVSQDRRFLFRYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ECOLI (Oligoribonuclease OS=Escherichia coli (strain K12) GN=orn PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ECOL6 (Oligoribonuclease OS=Escherichia coli O6 GN=orn PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ECOHS (Oligoribonuclease OS=Escherichia coli O9:H4 (strain HS) GN=orn PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ECO24 (Oligoribonuclease OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=orn PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BUCAP (Oligoribonuclease OS=Buchnera aphidicola subsp. Schizaphis graminum GN=orn PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E+ RI+EIA +ITD KL    EGP + IHQ +E +  M EW    H+ +GL ++V  S   E +AE + + F+KK V   +  + GNSVY D  FL +YMP+L + F +  +DVS+IK L   W
Sbjct:    8 LIWIDLEMTGLNSEIHRIIEIATVITDTKLNIISEGPVIAIHQKEEHIVIMDEWNTKIHKKNGLIKRVQKSIYNESKAESKTIFFLKKWVPIQSSPICGNSVYQDRKFLARYMPNLENYFHYRCIDVSTIKELVNRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSEA6 (Oligoribonuclease OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVWID+EMTGL  EVD +LEIA I+TD  L    EGP L IHQ+ + L++M +WC + H  SGLTE+   S + E+ A  + + F++K V      L GN++  D  F+ KYMP+L   F +  +DVS++K L   W
Sbjct:    8 LVWIDMEMTGLHPEVDVVLEIATIVTDANLNILAEGPVLAIHQSDDVLNNMNQWCIDTHGKSGLTERSRKSTVDEQTAVAETIRFLEKYVPKGASPLCGNTIGQDRRFMVKYMPELEDYFHYRNIDVSTLKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURXL (Oligoribonuclease OS=Burkholderia xenovorans (strain LB400) GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 2
Query:  215 MPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            M LVW+D+EMTGL+ + DRI+EIA ++T+  L + VEGP L IHQ+ E L  M +W QN H  SGL ++V  S ++E +A +Q+ +F+   V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   18 MNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_YERE84.083e-2746.72Oligoribonuclease OS=Yersinia enterocolitica serot... [more]
ORN_CORGB4.083e-2741.40Oligoribonuclease OS=Corynebacterium glutamicum (s... [more]
ORN_PHOLL6.965e-2746.72Oligoribonuclease OS=Photorhabdus luminescens subs... [more]
ORN_ECOLI9.097e-2745.99Oligoribonuclease OS=Escherichia coli (strain K12)... [more]
ORN_ECOL69.097e-2745.99Oligoribonuclease OS=Escherichia coli O6 GN=orn PE... [more]
ORN_ECOHS9.097e-2745.99Oligoribonuclease OS=Escherichia coli O9:H4 (strai... [more]
ORN_ECO249.097e-2745.99Oligoribonuclease OS=Escherichia coli O139:H28 (st... [more]
ORN_BUCAP9.097e-2745.99Oligoribonuclease OS=Buchnera aphidicola subsp. Sc... [more]
ORN_PSEA61.188e-2644.53Oligoribonuclease OS=Pseudoalteromonas atlantica (... [more]
ORN_BURXL1.188e-2642.45Oligoribonuclease OS=Burkholderia xenovorans (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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