FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928203_ssr83 microsatellite FC928203_ssr83:83..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14944 contig Ccv1_Contig14944:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURPS (Oligoribonuclease OS=Burkholderia pseudomallei GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURP0 (Oligoribonuclease OS=Burkholderia pseudomallei (strain 1106a) GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLARHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ALCBS (Oligoribonuclease OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=orn PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA I+TD +L    EGP L +HQ+   LD M EW   HH  SGL  +V  S + +  AE Q + F+++ V      + GNS+  D  FL  YMP L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLSPENDRIIEIATIVTDAELNVLAEGPVLAVHQSDALLDGMDEWNTTHHNNSGLVARVKASTVNDAAAESQTIAFLEQYVEAGMSPMCGNSICQDRRFLANYMPKLEAFFHYRNLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PHOPR (Oligoribonuclease OS=Photobacterium profundum GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL  E+ +I+EIA I+TD +L    EGP L IHQ++  L  M +WC N H  SGL E++  S  TE +A +Q + F+++ V      + GNS+  D  FL K+MP+L   F +  +DVS+IK L   W
Sbjct:    8 LIWVDLEMTGLDPEIHQIIEIATIVTDAQLNILAEGPVLAIHQSEAELAKMDDWCTNTHTNSGLVERIRQSKFTEEDAIRQTIAFLEQWVPKGASPICGNSIGQDRRFLYKHMPELEQYFHYRYLDVSTIKELTRRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURP6 (Oligoribonuclease OS=Burkholderia pseudomallei (strain 668) GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURMS (Oligoribonuclease OS=Burkholderia mallei (strain SAVP1) GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURMA (Oligoribonuclease OS=Burkholderia mallei GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURM9 (Oligoribonuclease OS=Burkholderia mallei (strain NCTC 10229) GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BURM7 (Oligoribonuclease OS=Burkholderia mallei (strain NCTC 10247) GN=orn PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 58/140 (41.43%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            ++ LVW+D+EMTGL  + DRI+EIA ++T+  L  +VEGP L IHQ+ E L  M +W +N H  SGL ++V  S++TE +A  Q+  F+ ++V      + GNS+  D  F+ ++MP+L   F +  +DVS++K LC  W
Sbjct:   17 ELNLVWLDMEMTGLDPDTDRIIEIAVVVTNSTLDIAVEGPVLAIHQSDETLAKMDDWNKNTHGRSGLIDRVRASSVTEADAAAQIAAFLAEHVPPGKSPMCGNSICQDRRFMARWMPELERFFHYRNLDVSTLKELCRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHIFL (Oligoribonuclease OS=Shigella flexneri GN=orn PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEVYFHYRYLDVSTLKELARRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_BURPS1.188e-2641.43Oligoribonuclease OS=Burkholderia pseudomallei GN=... [more]
ORN_BURP01.188e-2641.43Oligoribonuclease OS=Burkholderia pseudomallei (st... [more]
ORN_ALCBS1.188e-2644.53Oligoribonuclease OS=Alcanivorax borkumensis (stra... [more]
ORN_PHOPR1.552e-2643.80Oligoribonuclease OS=Photobacterium profundum GN=o... [more]
ORN_BURP61.552e-2641.43Oligoribonuclease OS=Burkholderia pseudomallei (st... [more]
ORN_BURMS1.552e-2641.43Oligoribonuclease OS=Burkholderia mallei (strain S... [more]
ORN_BURMA1.552e-2641.43Oligoribonuclease OS=Burkholderia mallei GN=orn PE... [more]
ORN_BURM91.552e-2641.43Oligoribonuclease OS=Burkholderia mallei (strain N... [more]
ORN_BURM71.552e-2641.43Oligoribonuclease OS=Burkholderia mallei (strain N... [more]
ORN_SHIFL2.027e-2645.99Oligoribonuclease OS=Shigella flexneri GN=orn PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
back to top