FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ECO57 (Oligoribonuclease OS=Escherichia coli O157:H7 GN=orn PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.647e-26
Identity = 63/137 (45.99%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M  W    H ASGL E+V  S + +REAE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDGWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHEDO (Oligoribonuclease OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=orn PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.457e-26
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ EVD ++EIA ++TD +L    +GP + IHQ+ E L  M +W Q HH  SGL ++V  S  TE +A +Q ++F+ + V      + GNS+  D  FL KYM +L   F +  VDVS+IK L   W
Sbjct:    8 LIWIDLEMTGLEPEVDVVIEIATLVTDSELNILAQGPVIAIHQSDETLAKMDDWNQKHHGQSGLIDRVKASQFTEADAIEQTIKFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEEYFHYRNVDVSTIKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSE14 (Oligoribonuclease OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=orn PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  + D I+E+A IITD +L    EGP + +HQ+ E L  M EW    H  SGLT++V  S ++  EAE Q +EF+K  V   +  + GNS+  D  FL ++MP L + F +  +DVS++K L   W
Sbjct:    4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRATN (Oligoribonuclease OS=Francisella tularensis subsp. novicida (strain U112) GN=orn PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + IHQ+ E L+SM EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP +     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIHQSDEILNSMNEWCIKVHCETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPKIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHEFN (Oligoribonuclease OS=Shewanella frigidimarina (strain NCIMB 400) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL+ +VDR++EIA ++TD +L    +GP L I+QT E L  M +W Q HH  SGL ++V  S  +E++A  Q ++F+ + V      + GNS+  D  FL KYM +L   F +  +DVS++K L   W
Sbjct:    8 LIWVDLEMTGLEPDVDRVIEIATLVTDQELNIIAQGPVLAIYQTDEVLAGMDDWNQKHHGESGLVDRVRASKCSEQDAIAQTIDFLAQYVPKGASPMCGNSIGQDRRFLNKYMLELEEFFHYRNIDVSTVKELVRRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSEU2 (Oligoribonuclease OS=Pseudomonas syringae pv. syringae (strain B728a) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  + D I+E+A IITD +L    EGP + +HQ+ E L  M EW    H  SGLT++V  S ++  EAE Q +EF+K  V   +  + GNS+  D  FL ++MP L + F +  +DVS++K L   W
Sbjct:    4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPICGNSICQDRRFLYRHMPTLENWFHYRNLDVSTLKELAARW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BORA1 (Oligoribonuclease OS=Bordetella avium (strain 197N) GN=orn PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.896e-26
Identity = 58/137 (42.34%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D+EMTGL  E +RI+E+A ++T+  LT   EGP LV+HQ+   L++M  W ++ H  SGL +KV  S LTE +AE+Q+++F+ + V      L GN++  D  F+  YMP+L   F +  +DVS++K L   W
Sbjct:    8 LVWLDMEMTGLDPEKERIIEVAVVVTEPDLTVVAEGPVLVVHQSDSVLEAMDNWNKSTHGKSGLIDKVRASTLTEAQAEQQLIDFLSQYVPAGKSPLCGNTISQDRRFMFAYMPNLERFFHYRNLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_THICR (Oligoribonuclease OS=Thiomicrospira crunogena (strain XCL-2) GN=orn PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.701e-26
Identity = 58/137 (42.34%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D+I+EIA ++TD +L    EGP + I   +  LD M  WC  HH  SGLT++V  S +T  +AE++ ++F+K  V      + GNS+  D  FL + MP+L   F +  +DVSS+K L   W
Sbjct:    7 LIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYLDGMDAWCTTHHGNSGLTKRVQESTITMAQAEQETIKFLKPYVPKGKSPMCGNSICQDRRFLIEQMPELEQFFHYRNLDVSSLKELARRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_COXBU (Oligoribonuclease OS=Coxiella burnetii GN=orn PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.701e-26
Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+DLEMTGL  E DRI+EIA I+T+  L    EGP   IHQ  + L +M  W  +HH ASGL E+V +S++ E EAE   + F++K V      L GNSV  D  FL +YMP L   F +  +DV+++K L   W
Sbjct:    8 LIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ACISJ (Oligoribonuclease OS=Acidovorax sp. (strain JS42) GN=orn PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.006e-25
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  167 LENQQNSQTPLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            + +  N   P   +    LVW+D EM+GL  E +R+LEIA ++T   LT  VEGP   IHQ    LD M  W +  H  SGL +KV  S +TE +AE++++ F+ + V      + GNS+  D  FL KYMP L + F +  VDVS++K L   W
Sbjct:    1 MSDTANPTVPALAKSDQNLVWLDCEMSGLNPETERLLEIAVVVTSADLTLRVEGPVFAIHQADAVLDGMDAWNKGTHGRSGLIDKVRASTVTEADAERELLAFLSRYVPKGVVPMCGNSIGQDRRFLVKYMPKLEAFFHYRNVDVSTLKELAKRW 155          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_ECO572.647e-2645.99Oligoribonuclease OS=Escherichia coli O157:H7 GN=o... [more]
ORN_SHEDO3.457e-2644.53Oligoribonuclease OS=Shewanella denitrificans (str... [more]
ORN_PSE144.515e-2643.57Oligoribonuclease OS=Pseudomonas syringae pv. phas... [more]
ORN_FRATN4.515e-2643.07Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_SHEFN5.896e-2642.34Oligoribonuclease OS=Shewanella frigidimarina (str... [more]
ORN_PSEU25.896e-2643.57Oligoribonuclease OS=Pseudomonas syringae pv. syri... [more]
ORN_BORA15.896e-2642.34Oligoribonuclease OS=Bordetella avium (strain 197N... [more]
ORN_THICR7.701e-2642.34Oligoribonuclease OS=Thiomicrospira crunogena (str... [more]
ORN_COXBU7.701e-2645.26Oligoribonuclease OS=Coxiella burnetii GN=orn PE=3... [more]
ORN_ACISJ1.006e-2540.00Oligoribonuclease OS=Acidovorax sp. (strain JS42) ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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