FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ACIAC (Oligoribonuclease OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=orn PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.006e-25
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  224 VWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            VW+D EMTGL  E DR+LEIA ++T  +L   VEGP   IHQ+   LD M  W +  H  SGL EKV  S +TE EAE+ ++EF+ + V      + GNS+  D  FL +YMP L + F +  VDVS++K L   W
Sbjct:   21 VWLDCEMTGLDPEKDRLLEIAVVVTGPELEPRVEGPVFAIHQSDALLDGMDAWNKGTHGRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCGNSIGQDRRFLVRYMPKLEAFFHYRNVDVSTLKELSRRW 156          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHEON (Oligoribonuclease OS=Shewanella oneidensis GN=orn PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDR++EIA ++TD +L    +GP + IHQ+ E L +M +W Q HH  SGL E+V  S + E EA  Q + F+ + V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_IDILO (Oligoribonuclease OS=Idiomarina loihiensis GN=orn PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL+ + + I+E+A I+TD +L    EGP + +HQ ++ LD M +W    H  SGL E+V  S   ER+A  + +EF+++ +      + GNS+  D  FL K+MP+L + F +  +DVS++K L   W
Sbjct:    7 KQRLIWIDLEMTGLEPDENHIIEVATIVTDAQLNTLAEGPVIAVHQPQKHLDRMDDWNVKTHTGSGLVERVKESQHDERKAAAETIEFLRQYIDAGVSPMCGNSICQDRRFLAKHMPELEAFFHYRNLDVSTLKELAKRW 146          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_CITK8 (Oligoribonuclease OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=orn PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+ E L  M +W    H  SGL ++V  S+  +R AE   +EF+K+ V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSAEQLALMDDWNVRTHTGSGLVDRVKASSFDDRAAELATIEFLKEWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BORPE (Oligoribonuclease OS=Bordetella pertussis GN=orn PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D+EMTGL  E +RI+E+A ++T+  LT   EGP LV+HQ    LD+M  W ++ H  SGL EKV  S L E +AE+ ++EF+ ++V      L GN++  D  F+  YMP+L   F +  +DVS++K L   W
Sbjct:    8 LVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BORPA (Oligoribonuclease OS=Bordetella parapertussis GN=orn PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D+EMTGL  E +RI+E+A ++T+  LT   EGP LV+HQ    LD+M  W ++ H  SGL EKV  S L E +AE+ ++EF+ ++V      L GN++  D  F+  YMP+L   F +  +DVS++K L   W
Sbjct:    8 LVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BORBR (Oligoribonuclease OS=Bordetella bronchiseptica GN=orn PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            LVW+D+EMTGL  E +RI+E+A ++T+  LT   EGP LV+HQ    LD+M  W ++ H  SGL EKV  S L E +AE+ ++EF+ ++V      L GN++  D  F+  YMP+L   F +  +DVS++K L   W
Sbjct:    8 LVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_RHOSR (Oligoribonuclease OS=Rhodococcus sp. (strain RHA1) GN=orn PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 61/139 (43.88%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTY-TPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWY 634
            LVWID EMTGL++  D+++EIA ++TD +L    EG D+VIH   + L +M +     HE SGLT++V  S +T  EAE+QV+ +++++V    T  LAGNS+  D  F+ + MPDL +   + ++DVSSIK L   WY
Sbjct:    5 LVWIDCEMTGLRLGTDKLIEIAALVTDSELNVLGEGVDIVIHADDDALAAMPDVVTKMHENSGLTDEVRKSTVTLAEAEQQVLAYIREHVPVAGTAPLAGNSIATDRGFIARDMPDLDTYLHYRMIDVSSIKELSRRWY 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_HAHCH (Oligoribonuclease OS=Hahella chejuensis (strain KCTC 2396) GN=orn PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + DRI+E+A ++T   L    EGP + +HQ    L  M +W +N H ASGLT +V  S + E +AEKQ+++F+ ++V      + GNS+  D  FL +YM DL   F +  +DVS++K L   W
Sbjct:    7 LIWIDLEMTGLDPDSDRIIEMAVVVTTSNLELVAEGPVIAVHQPDSVLALMDDWNRNTHGASGLTGRVKGSTIGEADAEKQILDFLAQHVDAGCSPMCGNSIGQDRRFLARYMKDLEKFFHYRNLDVSTLKELARRW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_AZOSB (Oligoribonuclease OS=Azoarcus sp. (strain BH72) GN=orn PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 56/137 (40.88%), Postives = 88/137 (64.23%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+W+D+EMTGL+ + DRI+EIA +ITD +L    E P + +HQ +  LD+M +W +N H  SGL ++V  S ++E EAE +++ F+++ V   T  + GNS+  D  FL +YMP   + F +  +DVS++K L   W
Sbjct:    8 LIWLDMEMTGLEPDRDRIIEIALVITDSQLNTIAEAPVIAVHQPESVLDAMDDWNKNTHGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMCGNSICQDRRFLARYMPAFEAWFHYRNLDVSTLKELAKRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_ACIAC1.006e-2545.59Oligoribonuclease OS=Acidovorax avenae subsp. citr... [more]
ORN_SHEON1.314e-2543.80Oligoribonuclease OS=Shewanella oneidensis GN=orn ... [more]
ORN_IDILO1.716e-2540.00Oligoribonuclease OS=Idiomarina loihiensis GN=orn ... [more]
ORN_CITK81.716e-2543.80Oligoribonuclease OS=Citrobacter koseri (strain AT... [more]
ORN_BORPE1.716e-2543.07Oligoribonuclease OS=Bordetella pertussis GN=orn P... [more]
ORN_BORPA1.716e-2543.07Oligoribonuclease OS=Bordetella parapertussis GN=o... [more]
ORN_BORBR1.716e-2543.07Oligoribonuclease OS=Bordetella bronchiseptica GN=... [more]
ORN_RHOSR2.241e-2543.88Oligoribonuclease OS=Rhodococcus sp. (strain RHA1)... [more]
ORN_HAHCH2.241e-2542.34Oligoribonuclease OS=Hahella chejuensis (strain KC... [more]
ORN_AZOSB2.241e-2540.88Oligoribonuclease OS=Azoarcus sp. (strain BH72) GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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