FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_VIBCH (Oligoribonuclease OS=Vibrio cholerae GN=orn PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E+ +I+E+A I+TD +L    EGP + IHQ +  L  M EWC   H ASGL  +V  S ++E EA  Q + F+K+ V      + GNS+  D  FL K+MP L + F +  +DVS+IK L   W
Sbjct:    8 LIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_VIBC3 (Oligoribonuclease OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=orn PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 61/137 (44.53%), Postives = 83/137 (60.58%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E+ +I+E+A I+TD +L    EGP + IHQ +  L  M EWC   H ASGL  +V  S ++E EA  Q + F+K+ V      + GNS+  D  FL K+MP L + F +  +DVS+IK L   W
Sbjct:    8 LIWIDLEMTGLDPEMHKIIEMATIVTDSELNILAEGPVIAIHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICGNSIGQDRRFLYKHMPRLEAYFHYRYIDVSTIKELTRRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SALTY (Oligoribonuclease OS=Salmonella typhimurium GN=orn PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+   L  M +W    H  SGL ++V  S + ER+AE   +EF+K  V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDASLNILAEGPTIAVHQSDAQLALMDDWNVRTHTGSGLVDRVKASTMGERDAELATIEFLKTWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SALTI (Oligoribonuclease OS=Salmonella typhi GN=orn PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+   L  M +W    H  SGL ++V  S + ER+AE   +EF+K  V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDASLNILAEGPTIAVHQSDAQLALMDDWNVRTHTGSGLVDRVKASTMGERDAELATIEFLKTWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SALPA (Oligoribonuclease OS=Salmonella paratyphi A GN=orn PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+   L  M +W    H  SGL ++V  S + ER+AE   +EF+K  V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDASLNILAEGPTIAVHQSDAQLALMDDWNVRTHTGSGLVDRVKASTMGERDAELATIEFLKTWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SALCH (Oligoribonuclease OS=Salmonella choleraesuis GN=orn PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+   L  M +W    H  SGL ++V  S + ER+AE   +EF+K  V      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDASLNILAEGPTIAVHQSDAQLALMDDWNVRTHTGSGLVDRVKASTMGERDAELATIEFLKTWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_NITEU (Oligoribonuclease OS=Nitrosomonas europaea GN=orn PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WID+EMTGL    DRI+E+A ++TD +L    E P LV+HQ  + L+ M +W Q+ H  SGL +KV  S L+E E E +++ F++ +V   T  + GNS+  D  FL + MP L S F +  +DVS++K L   W
Sbjct:    8 LIWIDMEMTGLNPGTDRIIEVALVVTDAQLNTLAEAPVLVVHQPDDILNGMDKWNQSTHGKSGLIDKVKTSILSEAEVESRMLAFLELHVPAGTSPMCGNSICQDRRFLARSMPKLESYFHYRNLDVSTLKELAKRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_ENT38 (Oligoribonuclease OS=Enterobacter sp. (strain 638) GN=orn PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRI+EIA ++TD  L    EGP + +HQ+   L  M +W    H  SGL E+V  S   +REAE   +EF+K+ +      + GNS+  D  FL KYMP+L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDAQLALMDDWNVRTHTGSGLVERVKASTQGDREAELATIEFLKQWIPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW 144
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_BAUCH (Oligoribonuclease OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=orn PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 64/137 (46.72%), Postives = 81/137 (59.12%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  E DRILEIA +ITD  L    EGP L IHQ++E L  M  W    H A+GL EKV  S L E  A  Q + F+++ V      + GNS+  D  FL +YMP L S F +  +DVS+++ L   W
Sbjct:    7 LIWIDLEMTGLNPEQDRILEIATLITDANLNIIAEGPVLAIHQSEEQLKLMNTWNIRIHTANGLIEKVRKSTLNEETAAAQTIAFLQEWVPAGKSPICGNSISQDRRFLYRYMPILESYFHYRCLDVSTLQELARRW 143
[Close]
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHESR (Oligoribonuclease OS=Shewanella sp. (strain MR-7) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 2 
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDR++EIA ++TD +L    +GP + IHQ+ E L +M +W Q HH  SGL ++V  S + E +A  Q + F+++ V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRW 144
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_VIBCH2.926e-2544.53Oligoribonuclease OS=Vibrio cholerae GN=orn PE=3 S... [more]
ORN_VIBC32.926e-2544.53Oligoribonuclease OS=Vibrio cholerae serotype O1 (... [more]
ORN_SALTY2.926e-2543.80Oligoribonuclease OS=Salmonella typhimurium GN=orn... [more]
ORN_SALTI2.926e-2543.80Oligoribonuclease OS=Salmonella typhi GN=orn PE=3 ... [more]
ORN_SALPA2.926e-2543.80Oligoribonuclease OS=Salmonella paratyphi A GN=orn... [more]
ORN_SALCH2.926e-2543.80Oligoribonuclease OS=Salmonella choleraesuis GN=or... [more]
ORN_NITEU2.926e-2542.34Oligoribonuclease OS=Nitrosomonas europaea GN=orn ... [more]
ORN_ENT382.926e-2543.80Oligoribonuclease OS=Enterobacter sp. (strain 638)... [more]
ORN_BAUCH2.926e-2546.72Oligoribonuclease OS=Baumannia cicadellinicola sub... [more]
ORN_SHESR3.822e-2542.34Oligoribonuclease OS=Shewanella sp. (strain MR-7) ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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